NCBI C++ ToolKit
CGeneInfoFileReader Member List

This is the complete list of members for CGeneInfoFileReader, including all inherited members.

CGeneInfoFileReader(const string &strGi2GeneFile, const string &strGene2OffsetFile, const string &strGi2OffsetFile, const string &strAllGeneDataFile, const string &strGene2GiFile, bool bGiToOffsetLookup=true)CGeneInfoFileReader
CGeneInfoFileReader(bool bGiToOffsetLookup=true)CGeneInfoFileReader
CheckDirExistence(const string &strDir)CGeneFileUtilsstatic
CheckExistence(const string &strFile)CGeneFileUtilsstatic
GetGeneIdsForGi(TGi gi, TGeneIdList &geneIdList)CGeneInfoFileReadervirtual
GetGeneInfoForGi(TGi gi, TGeneInfoList &infoList)CGeneInfoFileReadervirtual
GetGeneInfoForId(int geneId, TGeneInfoList &infoList)CGeneInfoFileReadervirtual
GetGenomicGisForGeneId(int geneId, TGiList &giList)CGeneInfoFileReadervirtual
GetLength(const string &strFile)CGeneFileUtilsstatic
GetProteinGisForGeneId(int geneId, TGiList &giList)CGeneInfoFileReadervirtual
GetRNAGisForGeneId(int geneId, TGiList &giList)CGeneInfoFileReadervirtual
m_bGiToOffsetLookupCGeneInfoFileReaderprivate
m_inAllDataCGeneInfoFileReaderprivate
m_mapIdToInfoCGeneInfoFileReaderprivate
m_memGene2GiFileCGeneInfoFileReaderprivate
m_memGene2OffsetFileCGeneInfoFileReaderprivate
m_memGi2GeneFileCGeneInfoFileReaderprivate
m_memGi2OffsetFileCGeneInfoFileReaderprivate
m_strAllGeneDataFileCGeneInfoFileReaderprivate
m_strGene2GiFileCGeneInfoFileReaderprivate
m_strGene2OffsetFileCGeneInfoFileReaderprivate
m_strGi2GeneFileCGeneInfoFileReaderprivate
m_strGi2OffsetFileCGeneInfoFileReaderprivate
OpenBinaryInputFile(const string &strFileName, CNcbiIfstream &in)CGeneFileUtilsstatic
OpenBinaryOutputFile(const string &strFileName, CNcbiOfstream &out)CGeneFileUtilsstatic
OpenTextInputFile(const string &strFileName, CNcbiIfstream &in)CGeneFileUtilsstatic
OpenTextOutputFile(const string &strFileName, CNcbiOfstream &out)CGeneFileUtilsstatic
ReadGeneInfo(CNcbiIfstream &in, int nOffset, CRef< CGeneInfo > &info)CGeneFileUtilsstatic
ReadRecord(CNcbiIfstream &in, STwoIntRecord &record)CGeneFileUtilsinlinestatic
ReadRecord(CNcbiIfstream &in, SMultiIntRecord< k_nFields > &record)CGeneFileUtilsinlinestatic
TGeneIdList typedefIGeneInfoInput
TGeneIdToGeneInfoMap typedefIGeneInfoInput
TGeneInfoList typedefIGeneInfoInput
TGiList typedefIGeneInfoInput
WriteGeneInfo(CNcbiOfstream &out, CRef< CGeneInfo > info, int &nCurrentOffset)CGeneFileUtilsstatic
WriteRecord(CNcbiOfstream &out, STwoIntRecord &record)CGeneFileUtilsinlinestatic
WriteRecord(CNcbiOfstream &out, SMultiIntRecord< k_nFields > &record)CGeneFileUtilsinlinestatic
x_GeneIdToGi(int geneId, int iGiField, list< TGi > &listGis)CGeneInfoFileReaderprivate
x_GeneIdToOffset(int geneId, int &nOffset)CGeneInfoFileReaderprivate
x_GiToGeneId(TGi gi, list< int > &listGeneIds)CGeneInfoFileReaderprivate
x_GiToOffset(TGi gi, list< int > &listOffsets)CGeneInfoFileReaderprivate
x_MapMemFiles()CGeneInfoFileReaderprivate
x_OffsetToInfo(int nOffset, CRef< CGeneInfo > &info)CGeneInfoFileReaderprivate
x_UnmapMemFiles()CGeneInfoFileReaderprivate
~CGeneInfoFileReader()CGeneInfoFileReadervirtual
~IGeneInfoInput()IGeneInfoInputinlinevirtual
Modified on Wed Apr 17 13:08:27 2024 by modify_doxy.py rev. 669887