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NCBI C++ ToolKit
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This is the complete list of members for CGeneInfoFileReader, including all inherited members.
| CGeneInfoFileReader(const string &strGi2GeneFile, const string &strGene2OffsetFile, const string &strGi2OffsetFile, const string &strAllGeneDataFile, const string &strGene2GiFile, bool bGiToOffsetLookup=true) | CGeneInfoFileReader | |
| CGeneInfoFileReader(bool bGiToOffsetLookup=true) | CGeneInfoFileReader | |
| CheckDirExistence(const string &strDir) | CGeneFileUtils | static |
| CheckExistence(const string &strFile) | CGeneFileUtils | static |
| GetGeneIdsForGi(TGi gi, TGeneIdList &geneIdList) | CGeneInfoFileReader | virtual |
| GetGeneInfoForGi(TGi gi, TGeneInfoList &infoList) | CGeneInfoFileReader | virtual |
| GetGeneInfoForId(int geneId, TGeneInfoList &infoList) | CGeneInfoFileReader | virtual |
| GetGenomicGisForGeneId(int geneId, TGiList &giList) | CGeneInfoFileReader | virtual |
| GetLength(const string &strFile) | CGeneFileUtils | static |
| GetProteinGisForGeneId(int geneId, TGiList &giList) | CGeneInfoFileReader | virtual |
| GetRNAGisForGeneId(int geneId, TGiList &giList) | CGeneInfoFileReader | virtual |
| m_bGiToOffsetLookup | CGeneInfoFileReader | private |
| m_inAllData | CGeneInfoFileReader | private |
| m_mapIdToInfo | CGeneInfoFileReader | private |
| m_memGene2GiFile | CGeneInfoFileReader | private |
| m_memGene2OffsetFile | CGeneInfoFileReader | private |
| m_memGi2GeneFile | CGeneInfoFileReader | private |
| m_memGi2OffsetFile | CGeneInfoFileReader | private |
| m_strAllGeneDataFile | CGeneInfoFileReader | private |
| m_strGene2GiFile | CGeneInfoFileReader | private |
| m_strGene2OffsetFile | CGeneInfoFileReader | private |
| m_strGi2GeneFile | CGeneInfoFileReader | private |
| m_strGi2OffsetFile | CGeneInfoFileReader | private |
| OpenBinaryInputFile(const string &strFileName, CNcbiIfstream &in) | CGeneFileUtils | static |
| OpenBinaryOutputFile(const string &strFileName, CNcbiOfstream &out) | CGeneFileUtils | static |
| OpenTextInputFile(const string &strFileName, CNcbiIfstream &in) | CGeneFileUtils | static |
| OpenTextOutputFile(const string &strFileName, CNcbiOfstream &out) | CGeneFileUtils | static |
| ReadGeneInfo(CNcbiIfstream &in, int nOffset, CRef< CGeneInfo > &info) | CGeneFileUtils | static |
| ReadRecord(CNcbiIfstream &in, STwoIntRecord &record) | CGeneFileUtils | inlinestatic |
| ReadRecord(CNcbiIfstream &in, SMultiIntRecord< k_nFields > &record) | CGeneFileUtils | inlinestatic |
| TGeneIdList typedef | IGeneInfoInput | |
| TGeneIdToGeneInfoMap typedef | IGeneInfoInput | |
| TGeneInfoList typedef | IGeneInfoInput | |
| TGiList typedef | IGeneInfoInput | |
| WriteGeneInfo(CNcbiOfstream &out, CRef< CGeneInfo > info, int &nCurrentOffset) | CGeneFileUtils | static |
| WriteRecord(CNcbiOfstream &out, STwoIntRecord &record) | CGeneFileUtils | inlinestatic |
| WriteRecord(CNcbiOfstream &out, SMultiIntRecord< k_nFields > &record) | CGeneFileUtils | inlinestatic |
| x_GeneIdToGi(int geneId, int iGiField, list< TGi > &listGis) | CGeneInfoFileReader | private |
| x_GeneIdToOffset(int geneId, int &nOffset) | CGeneInfoFileReader | private |
| x_GiToGeneId(TGi gi, list< int > &listGeneIds) | CGeneInfoFileReader | private |
| x_GiToOffset(TGi gi, list< int > &listOffsets) | CGeneInfoFileReader | private |
| x_MapMemFiles() | CGeneInfoFileReader | private |
| x_OffsetToInfo(int nOffset, CRef< CGeneInfo > &info) | CGeneInfoFileReader | private |
| x_UnmapMemFiles() | CGeneInfoFileReader | private |
| ~CGeneInfoFileReader() | CGeneInfoFileReader | virtual |
| ~IGeneInfoInput() | IGeneInfoInput | inlinevirtual |
1.9.0
Modified on Fri Sep 20 14:57:53 2024 by modify_doxy.py rev. 669887