CGff3FeatureMap Class Reference

Search Toolkit Book for CGff3FeatureMap

#include "gff3_annot_assembler.hpp"
(Private to src/objtools/import/ftable.)

Collaboration diagram for CGff3FeatureMap:

Public Member Functions
	CGff3FeatureMap ()
	~CGff3FeatureMap ()
void	AddFeature (const std::string &id, CRef< CSeq_feat > pFeature)
CRef< CSeq_feat >	FindFeature (const std::string &id)

Private Attributes
std::map< std::string, CRef< CSeq_feat > >	mMap

Detailed Description

Definition at line 52 of file gff3_annot_assembler.hpp.

Constructor & Destructor Documentation

CGff3FeatureMap()

CGff3FeatureMap::CGff3FeatureMap ( )

inline

Definition at line 56 of file gff3_annot_assembler.hpp.

~CGff3FeatureMap()

CGff3FeatureMap::~CGff3FeatureMap ( )

inline

Definition at line 58 of file gff3_annot_assembler.hpp.

Member Function Documentation

AddFeature()

void CGff3FeatureMap::AddFeature ( const std::string &  id, CRef< CSeq_feat >  pFeature  )

inline

Definition at line 61 of file gff3_annot_assembler.hpp.

References mMap.

Referenced by CGff3AnnotAssembler::xProcessFeatureCds(), CGff3AnnotAssembler::xProcessFeatureDefault(), and CGff3AnnotAssembler::xProcessFeatureRna().

FindFeature()

CRef<CSeq_feat> CGff3FeatureMap::FindFeature ( const std::string &  id )

inline

Definition at line 74 of file gff3_annot_assembler.hpp.

References mMap.

Referenced by CGff3AnnotAssembler::FinalizeAnnot(), CGff3AnnotAssembler::xProcessFeatureCds(), and CGff3AnnotAssembler::xProcessFeatureExon().

Member Data Documentation

mMap

std::map<std::string, CRef<CSeq_feat> > CGff3FeatureMap::mMap

private

Definition at line 85 of file gff3_annot_assembler.hpp.

Referenced by AddFeature(), and FindFeature().

---

The documentation for this class was generated from the following file:

• src/objtools/import/ftable/gff3_annot_assembler.hpp