CGff3PendingFeatureList Class Reference

Search Toolkit Book for CGff3PendingFeatureList

#include "gff3_annot_assembler.hpp"
(Private to src/objtools/import/ftable.)

Collaboration diagram for CGff3PendingFeatureList:

Public Member Functions
	CGff3PendingFeatureList ()
	~CGff3PendingFeatureList ()
void	AddFeature (const std::string &id, CRef< CSeq_feat > pFeature)
bool	FindPendingFeatures (const std::string &id, std::vector< CRef< CSeq_feat >> &features)
void	MarkFeaturesDone (const std::string &id)

Private Attributes
std::map< std::string, std::vector< CRef< CSeq_feat > > >	mPendingMap

Detailed Description

Definition at line 89 of file gff3_annot_assembler.hpp.

Constructor & Destructor Documentation

CGff3PendingFeatureList()

CGff3PendingFeatureList::CGff3PendingFeatureList ( )

inline

Definition at line 93 of file gff3_annot_assembler.hpp.

~CGff3PendingFeatureList()

CGff3PendingFeatureList::~CGff3PendingFeatureList ( )

inline

Definition at line 95 of file gff3_annot_assembler.hpp.

Member Function Documentation

AddFeature()

void CGff3PendingFeatureList::AddFeature ( const std::string &  id, CRef< CSeq_feat >  pFeature  )

inline

Definition at line 98 of file gff3_annot_assembler.hpp.

References mPendingMap.

Referenced by CGff3AnnotAssembler::xProcessFeatureExon().

FindPendingFeatures()

bool CGff3PendingFeatureList::FindPendingFeatures ( const std::string &  id, std::vector< CRef< CSeq_feat >> &  features  )

inline

Definition at line 114 of file gff3_annot_assembler.hpp.

References features, and mPendingMap.

Referenced by CGff3AnnotAssembler::xProcessFeatureRna().

MarkFeaturesDone()

void CGff3PendingFeatureList::MarkFeaturesDone ( const std::string &  id )

inline

Definition at line 127 of file gff3_annot_assembler.hpp.

References mPendingMap.

Referenced by CGff3AnnotAssembler::xProcessFeatureRna().

Member Data Documentation

mPendingMap

std::map<std::string, std::vector<CRef<CSeq_feat> > > CGff3PendingFeatureList::mPendingMap

private

Definition at line 134 of file gff3_annot_assembler.hpp.

Referenced by AddFeature(), FindPendingFeatures(), and MarkFeaturesDone().

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The documentation for this class was generated from the following file:

• src/objtools/import/ftable/gff3_annot_assembler.hpp