CGffIdTracker Class Reference

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#include <objtools/readers/gff3_location_merger.hpp>

Collaboration diagram for CGffIdTracker:

Public Member Functions
	CGffIdTracker (CReaderListener *pListener=nullptr)
void	CheckAndIndexRecord (string id, const CGff2Record &record)
void	CheckAndIndexRecord (const CGff2Record &record)
void	CheckIntegrity ()

Private Attributes
map< string, list< CGffIdTrackRecord > >	mIds
set< string >	mParentIds
CReaderListener *	m_pMessageListener =nullptr

Detailed Description

Definition at line 94 of file gff3_location_merger.hpp.

Constructor & Destructor Documentation

CGffIdTracker()

CGffIdTracker::CGffIdTracker

(

CReaderListener *

pListener = nullptr

)

Definition at line 82 of file gff3_location_merger.cpp.

Member Function Documentation

CheckAndIndexRecord() [1/2]

void CGffIdTracker::CheckAndIndexRecord

(

const CGff2Record &

record

)

Definition at line 89 of file gff3_location_merger.cpp.

References CheckAndIndexRecord(), and CGff2Record::GetAttribute().

CheckAndIndexRecord() [2/2]

void CGffIdTracker::CheckAndIndexRecord	(	string	id,
		const CGff2Record &	record
	)

Definition at line 100 of file gff3_location_merger.cpp.

References _ASSERT, eDiag_Error, ctll::empty(), map_checker< Container >::end(), map_checker< Container >::find(), CGff2Record::GetAttribute(), CGffBaseColumns::Id(), m_pMessageListener, mIds, mParentIds, CGffBaseColumns::NormalizedType(), and CObjtoolsListener::PutMessage().

Referenced by CGff3LocationMerger::AddRecord(), and CheckAndIndexRecord().

CheckIntegrity()

void CGffIdTracker::CheckIntegrity

(

)

Definition at line 162 of file gff3_location_merger.cpp.

References eDiag_Error, map_checker< Container >::end(), map_checker< Container >::find(), m_pMessageListener, mIds, mParentIds, and CObjtoolsListener::PutMessage().

Referenced by CGff3LocationMerger::Validate().

Member Data Documentation

m_pMessageListener

CReaderListener* CGffIdTracker::m_pMessageListener =nullptr

private

Definition at line 112 of file gff3_location_merger.hpp.

Referenced by CheckAndIndexRecord(), and CheckIntegrity().

mIds

map<string, list<CGffIdTrackRecord> > CGffIdTracker::mIds

private

Definition at line 110 of file gff3_location_merger.hpp.

Referenced by CheckAndIndexRecord(), and CheckIntegrity().

mParentIds

set<string> CGffIdTracker::mParentIds

private

Definition at line 111 of file gff3_location_merger.hpp.

Referenced by CheckAndIndexRecord(), and CheckIntegrity().

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The documentation for this class was generated from the following files:

• include/objtools/readers/gff3_location_merger.hpp
• src/objtools/readers/gff3_location_merger.cpp