NCBI C++ ToolKit
Public Member Functions | List of all members
CGffSourceRecord Class Reference

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#include <objtools/writers/gff_feature_record.hpp>

+ Inheritance diagram for CGffSourceRecord:
+ Collaboration diagram for CGffSourceRecord:

Public Member Functions

 CGffSourceRecord (const string &id="")
- Public Member Functions inherited from CGffBaseRecord
 CGffBaseRecord (const string &id="")
 CGffBaseRecord (const CGffBaseRecord &)
virtual ~CGffBaseRecord ()
const TAttributesAttributes () const
bool AddAttribute (const string &, const string &)
bool AddAttributes (const string &, const vector< string > &)
bool SetAttribute (const string &, const string &)
bool SetAttributes (const string &, const vector< string > &)
bool GetAttributes (const string &, vector< string > &) const
bool DropAttributes (const string &)
void SetSeqId (const string &)
void SetMethod (const string &)
void SetType (const string &)
void SetLocation (unsigned int, unsigned int, ENa_strand=objects::eNa_strand_unknown)
void SetStrand (ENa_strand)
void SetScore (const CScore &)
void SetScore (const std::string &)
void SetPhase (unsigned int)
virtual string StrSeqId () const
virtual string StrMethod () const
virtual string StrType () const
virtual string StrSeqStart () const
virtual string StrSeqStop () const
virtual string StrStrand () const
virtual string StrScore () const
virtual string StrPhase () const
virtual string StrAttributes () const
bool CanGetLocation () const
const CSeq_locGetLocation () const
unsigned int SeqStart () const
unsigned int SeqStop () const
objects::ENa_strand SeqStrand () const
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 CObject (const CObject &src)
 Copy constructor. More...
virtual ~CObject (void)
 Destructor. More...
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
void AddReference (void) const
 Add reference to object. More...
void RemoveReference (void) const
 Remove reference to object. More...
void ReleaseReference (void) const
 Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size)
 Define new operator for memory allocation. More...
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place)
 Define new operator. More...
void operator delete (void *ptr, void *place)
 Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
virtual ~CDebugDumpable (void)
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void DumpToConsole (void) const

Additional Inherited Members

- Public Types inherited from CGffBaseRecord
typedef map< string, vector< string > > TAttributes
typedef TAttributes::iterator TAttrIt
typedef TAttributes::const_iterator TAttrCit
typedef map< string, stringTScores
typedef TScores::iterator TScoreIt
typedef TScores::const_iterator TScoreCit
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
typedef Uint8 TCount
 Alias for value type of counter. More...
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
static EAllocFillMode GetAllocFillMode (void)
static void SetAllocFillMode (EAllocFillMode mode)
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
- Protected Member Functions inherited from CGffBaseRecord
const stringxEscapedValue (const string &key, const string &value) const
const stringxEscapedString (const string &value) const
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
- Protected Attributes inherited from CGffBaseRecord
CRef< CSeq_locm_pLoc
string mSeqId
string mType
string mMethod
unsigned int mSeqStart
unsigned int mSeqStop
string mScore
string mStrand
optional< intmPhase
TAttributes mAttributes
TScores mExtraScores
- Static Protected Attributes inherited from CGffBaseRecord
static const char * ATTR_SEPARATOR = ";"

Detailed Description

Definition at line 74 of file gff_feature_record.hpp.

Constructor & Destructor Documentation

◆ CGffSourceRecord()

CGffSourceRecord::CGffSourceRecord ( const string id = "")

Definition at line 79 of file gff_feature_record.hpp.

The documentation for this class was generated from the following file:
Modified on Mon Jul 22 05:06:20 2024 by rev. 669887