Search Toolkit Book for CGlyphContainer

File Description: More...

#include <gui/widgets/seq_graphic/glyph_container_track.hpp>

Inheritance diagram for CGlyphContainer:

Collaboration diagram for CGlyphContainer:

Public Types
typedef vector< CRef< CCommentGlyph > >	TComments

typedef set< string >	THighlights

typedef map< string, THighlights >	TKeyHighlights

Public Types inherited from CLayoutTrack
enum	FTrackAttr { fMovable = 1 << 0 , fCollapsible = 1 << 1 , fFrameVisible = 1 << 2 , fShowTitle = 1 << 3 , fShowAlways = 1 << 4 , fFullTrack = 1 << 5 , fNavigable = 1 << 6 , fShowIcons = 1 << 7 , fDefaultAttr }

typedef vector< CConstRef< CSeqGlyph > >	TLayObjVector

typedef unsigned	TTrackAttrFlags

typedef list< CRef< CLayoutTrack > >	TLayoutTracks

typedef map< string, string >	TKeyValuePairs

Public Types inherited from CSeqGlyph
enum	ENeighbours { eNghbrs_None = 0x0 , eNghbrs_Left = 0x1 , eNghbrs_Right = 0x2 , eNghbrs_Both = 0x3 }

typedef vector< CHTMLActiveArea >	TAreaVector

typedef list< CRef< CSeqGlyph > >	TObjects

typedef list< CConstRef< CSeqGlyph > >	TConstObjects

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CGlyphContainer (CRenderingContext *r_cntx)

virtual	~CGlyphContainer ()

void	Add (CSeqGlyph *obj)
	Append a layout object to the end. More...

void	SetObjects (const CLayoutGroup::TObjectList &objs)

virtual void	SetComments (const string &comment_str)
	set comments. More...

virtual void	SetHighlights (const string &hl_str)
	set a list of 'object' need to be highlighted. More...

void	SetCommentGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config)

void	ResetCommentGlyph ()

void	SetLabelGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config)

void	ResetLabelGlyph ()

const THighlights &	GetHighlights () const

const TKeyHighlights &	GetHighlightsByKey () const

CLayoutGroup &	SetGroup ()

const CLayoutGroup &	GetGroup () const

CLayoutGroup::TObjectList &	SetChildren ()

const CLayoutGroup::TObjectList &	GetChildren () const

bool	Empty () const

void	SetLayoutPolicy (ILayoutPolicy *policy)
	Set policy on how to deploy the layout of its children. More...

CSeqGlyph interface implementation
virtual CRef< CSeqGlyph >	HitTest (const TModelPoint &p)
	Hit testing. More...

virtual bool	HitTestHor (TSeqPos x, const CObject *obj)

virtual bool	Intersects (const TModelRect &rect, TConstObjects &objs) const
	Intersect testing. More...

virtual void	GetHTMLActiveAreas (TAreaVector *p_areas) const
	Get html active areas. More...

virtual void	Update (bool layout_only)
	Update content and layout including the bounding box. More...

virtual bool	Accept (IGlyphVisitor *visitor)
	Interface for accepting an IGlyphVisitor. More...

CLayoutTrack public methods.
virtual const CTrackTypeInfo &	GetTypeInfo () const

Public Member Functions inherited from CLayoutTrack
	CLayoutTrack (CRenderingContext *r_cntx)

virtual	~CLayoutTrack ()

void	LoadProfile (const string &profile_str)
	set track profile and load settings. More...

void	SaveProfile ()

void	SetProfile (const string &preset_style)
	CLayoutTrack inline method implmentation. More...

const string &	GetProfile () const

virtual string	GetFullTitle () const
	get a more meaningful title. More...

string	GetTitle () const
	get the track title. More...

const TTrackErrorStatus &	GetErrorStatus () const

void	SetErrorStatus (const TTrackErrorStatus &ErrorStatus)

bool	isInErrorStatus () const

bool	isRmtBased () const

bool	isRemotePath () const

virtual CHTMLActiveArea *	InitHTMLActiveArea (TAreaVector *p_areas) const
	Initialize the HTML active area for a track. More...

void	MouseOut ()

bool	OnMotion (const TModelPoint &pt)

bool	GetShowTitle () const

void	SetShowTitle (bool flag)

void	SetConfig (CRef< CSeqGraphicConfig > conf)

int	GetIndent () const

void	SetIndent (int indent)

void	SetMsg (const string &msg)

void	SetParentTrack (CLayoutTrack *parent)

CLayoutTrack *	GetParentTrack ()

const CLayoutTrack *	GetParentTrack () const

bool	IsOn () const

bool	IsExpanded () const

bool	IsMovable () const

bool	IsCollapsible () const

void	SetShow (bool shown)
	set the flag only. More...

void	SetExpanded (bool f)

void	SetShowFrame (bool show)

void	MoveTo (TModelUnit y)

void	SetTrackAttr (TTrackAttrFlags flags)

void	SetTitle (const string &label, const string &default_title=NcbiEmptyString)

void	SetIsBlast (bool isBlast)

void	SetHost (ILayoutTrackHost *host)

void	SetOrder (int order)

int	GetOrder () const

void	SetId (const string &id)

const string &	GetId () const

void	CloseMe ()
	close this track. More...

void	ShowMe ()

void	Expand (bool expand)
	Collapse or expand the track. More...

virtual bool	OnLeftDown (const TModelPoint &p)

virtual bool	OnLeftDblClick (const TModelPoint &p)

virtual bool	NeedTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Check if need to show tooltip. More...

virtual void	GetTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Get the tooltip if available. More...

Public Member Functions inherited from CSeqGlyph
	CSeqGlyph ()

virtual	~CSeqGlyph ()

virtual TSeqRange	GetRange (void) const
	get the total range of this object. More...

virtual bool	SetSelected (bool flag)
	Select or deselect this glyph. More...

virtual void	SetHideLabel (bool)
	Force to hide label. More...

virtual bool	HasSideLabel () const
	Query if there is label and label is on the side. More...

virtual bool	IsClickable () const
	Query if this glyph is clickable. More...

virtual bool	LessBySeqPos (const CSeqGlyph &obj) const
	compare this object to another based on glyph sequence position. More...

bool	LessByPos (const CSeqGlyph &obj) const
	compare this object to another, based on glyph geometry position. More...

bool	LessBySeqSize (const CSeqGlyph &obj) const
	compare this object to another, based on sequence size. More...

bool	LessBySize (const CSeqGlyph &obj) const
	compare this object to another, based on geometry size. More...

void	Draw () const
	render the layout. More...

TModelRect	GetModelRect () const
	get the bounding box. More...

bool	IsIn (const TModelPoint &p) const
	Hit test for points in PARENT COORD. More...

bool	IsIn (TModelUnit x, TModelUnit y) const

bool	IsInHor (TModelUnit x) const

void	SetRender (IGlyphRenderer *renderer)
	set customized renderer for this layout objects. More...

void	SetRenderingContext (CRenderingContext *context)
	Set the rendering context. More...

const CRenderingContext *	GetRenderingContext () const
	Get the rendering context. More...

void	SetTearline (size_t Tearline)
	tearline factor – used to limit a list of glyphs More...

size_t	GetTearline () const

void	SetTearlineText (const string &sTearlineText)
	tearline text – if set, is appended to the glyph name (does not naffect processing otherwise) More...

string	GetTearlineText () const

void	SetRowNum (size_t cur_row)

size_t	GetRowNum () const

void	SetVisible (size_t v)

size_t	GetVisible () const

int	GetLevel () const

void	SetLevel (int Level)

virtual string	GetPName () const
	persistent name of the glyph should not depend on the instance of the glyph, but should uniquely reflect its contents so two glyphs having the same contents will have the same name currently used to track isDrawn() status for expandable glyphs default implementation returns an empty string implementations exist for CFeatGlyph (name of the contained feature) and CLayoutGroup (concatenation of all sorted children names) More...

float	GetFadeFactor () const

virtual bool	OnLeftUp (const TModelPoint &)

virtual bool	OnContextMenu (wxContextMenuEvent &event)

bool	IsSelected () const

bool	IsHighlighted () const

CRgbaColor *	GetHighlightsColor () const

virtual TModelUnit	GetHeight () const

virtual TModelUnit	GetWidth () const

virtual TModelUnit	GetLeft () const

virtual TModelUnit	GetTop () const

virtual TModelUnit	GetRight () const

virtual TModelUnit	GetBottom () const

const TModelPoint &	GetPos () const

void	GetPosInWorld (TModelPoint &pos) const
	Get top left position in world coordinate. More...

const CSeqGlyph *	GetParent (void) const

CSeqGlyph *	GetParent (void)

ENeighbours	GetNeighbours () const

void	SetHighlighted (bool flag)

void	SetHighlightsColor (const CRgbaColor &hl_color)

void	SetHighlightsColor (const string &hl_color_str)

virtual void	SetWidth (TModelUnit w)

virtual void	SetHeight (TModelUnit h)

virtual void	SetLeft (TModelUnit l)

virtual void	SetTop (TModelUnit b)

virtual void	SetPos (const TModelPoint &upper_left)

void	SetParent (CSeqGlyph *p)

CSeqGlyph *	SetParent (void)

void	SetNeighbours (ENeighbours neighbours)

Public Member Functions inherited from CObjectEx
	CObjectEx (void)

virtual	~CObjectEx (void)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Member Functions inherited from CWeakObject
	CWeakObject (void)

virtual	~CWeakObject (void)

CPtrToObjectProxy *	GetPtrProxy (void) const
	Get pointer to proxy object containing pointer to this object. More...

Protected Member Functions
virtual void	x_UpdateBoundingBox ()
	Update the bounding box assuming children's sizes are fixed if any. More...

virtual string	x_GetHistMsg () const
	Histogram configuration (linear, log, etc) is also on the title bar but multiple track types can have histograms, so we use virtual functinons. More...

CLayoutTrack pure virtual method implementation.
virtual void	x_RenderContent () const
	The content rendering must be implemented in the derived layout tracks. More...

virtual bool	x_Empty () const

virtual void	x_ClearContent ()

Protected Member Functions inherited from CLayoutTrack
virtual void	x_Draw () const
	The default renderer for this layout object. More...

virtual void	x_Expand (bool expand)
	Collapse or expand the track. More...

virtual bool	x_ShowTitle () const
	Need to preserve title space and show the title. More...

TModelUnit	x_GetTBHeight () const
	Get title bar height including margin. More...

CConstRef< CSeqGraphicConfig >	x_GetGlobalConfig () const
	Method for getting global configuration from rendering context. More...

void	x_OnLayoutChanged ()
	update the layout. More...

virtual void	x_LoadSettings (const string &preset_style, const TKeyValuePairs &settings)
	load the track settings. More...

virtual void	x_SaveSettings (const string &preset_style)
	save the track settings to a profile string. More...

virtual void	x_GetTBRect (TModelRect &rc) const
	Get title bar rectange exclude top margin. More...

virtual void	x_RenderProgressBar () const
	Method for rendering the job loading or layout generating progress. More...

virtual void	x_RenderTitleBar () const
	Method for rendering the track title bar. More...

virtual void	x_RenderIcon (TIconID id, bool highlighted, bool lite_version=false) const
	Render track icons. More...

virtual void	x_OnIconClicked (TIconID id)
	Mouse left-click event handler on an icon. More...

virtual int	x_GetIconState (TIconID id) const
	Get current status for a given button. More...

void	x_RegisterIcon (const SIconInfo &icon)
	register track icons. More...

void	x_DeregisterIcon (TIconID id)
	deregister an icon if already registered. More...

void	x_EnableIcon (TIconID id, bool enabled)
	Enable/disable an existing icon. More...

void	x_ShowIcon (TIconID id, bool shown)
	Show/hide an existing icon. More...

int	x_HitIconTest (const TModelPoint &p) const
	hit any icon?. More...

bool	x_HitTitleBar (const TModelPoint &p) const
	hit the title bar?. More...

void	x_SetStatus (const string &msg, int progress)

void	x_SetStartStatus ()

void	x_SetFinishStatus ()

bool	x_IsNCBITrack () const
	Indicates whether the track is NCBI track. More...

Protected Member Functions inherited from CSeqGlyph
virtual void	x_DrawHighlight () const

void	x_DrawInnerLabelColumns (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible) const

void	x_DrawInnerLabels (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible, bool inside_only, vector< TModelRange > labels_ranges=nullptr, TSeqRange interval=nullptr, bool XOR_mode=false) const

void	x_DrawTruncatedLabel (const string &label, const CGlTextureFont &font, TModelUnit width, TModelUnit x, TModelUnit y, vector< TModelRange > *labels_ranges=nullptr) const

void	x_DrawException () const
	Draw a shading background to indicate exception. More...

void	x_Parent2Local (TModelPoint &pnt) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelUnit &, TModelUnit &y) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelRect &rect) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_World2Local (TModelPoint &p) const
	Transform the coordiante from world coord. to local coord. More...

void	x_World2Local (TModelUnit &x, TModelUnit &y) const

void	x_Local2World (TModelPoint &p) const
	Transform the coordiantes from local coord. to world coord. More...

void	x_Local2World (TModelUnit &x, TModelUnit &y) const

void	x_InitHTMLActiveArea (CHTMLActiveArea &area) const
	initialize the basic information for a given active area. More...

bool	x_Visible_V () const
	is this glyph visible in vertical direction? More...

template<class T >
bool	x_IntersectVisible (const CRange< T > &SeqRange, T &from, T &to) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Member Functions inherited from CWeakObject
void	CleanWeakRefs (void) const
	Method cleaning all CWeakRefs referencing at this moment to the object After calling to this method all existing CWeakRefs referencing to the object will return NULL, so it effectively will be equal to deleting the object. More...

Protected Attributes
CLayoutGroup	m_Group

CRef< CSimpleLayout >	m_Simple

CRef< CInlineLayout >	m_Inline

CRef< CLayeredLayout >	m_Layered

Protected Attributes inherited from CLayoutTrack
int	m_Order
	track order number More...

string	m_Id
	track identifier More...

bool	m_On
	is this track shown More...

bool	m_ShowFrame
	need to draw frame, not title More...

bool	m_Expanded
	is this track in expanded state More...

TIcons	m_Icons
	registered icon info More...

int	m_HighlightedIcon
	the highlighted icon index More...

TTrackAttrFlags	m_Attrs
	various track attributes More...

ILayoutTrackHost *	m_LTHost
	Top level host owning the tracks. More...

string	m_Title
	track title More...

bool	m_isBlast {false}
	true if the track is known to be generated and uploaded by BLAST More...

string	m_DefaultTitle
	Default track title. More...

string	m_Msg
	special message need to show on title bar More...

int	m_Progress
	any job progress index (0 - 100) More...

int	m_IndentLevel
	track hierachy indentation level. More...

TTrackErrorStatus	m_ErrorStatus

CRef< CSeqGraphicConfig >	m_gConfig
	global configuration. More...

string	m_Profile = "Default"
	track setting profile More...

Protected Attributes inherited from CSeqGlyph
CSeqGlyph *	m_Parent
	parent/child relationships for this feature More...

CRenderingContext *	m_Context
	the rendering context More...

unique_ptr< CRgbaColor >	m_HighlightsColor
	Highlight color. More...

ENeighbours	m_Neighbours
	Indicates whether the glyph has neighbours. More...

Private Member Functions
	CGlyphContainer (const CGlyphContainer &)
	prohibited copy constructor and assignment operator. More...

CGlyphContainer &	operator= (const CGlyphContainer &)

void	x_UpdateComments (TComments &comments)

void	x_UpdateCommentTargetPos (TComments &comments)

Private Attributes
TComments	m_Comments

TComments	m_Labels
	object labels shown at any arbitrary position. More...

THighlights	m_Highlights

TKeyHighlights	m_KeyHighlights

Static Private Attributes
static CTrackTypeInfo	m_TypeInfo

Additional Inherited Members
Static Public Member Functions inherited from CLayoutTrack
static void	RegisterIconImage (const TIconAlias &key, const string &img_file)
	register the image for an icon. More...

Static Public Member Functions inherited from CSeqGlyph
static bool	PointInRect (const TModelPoint &p, const TModelRect &rc)

static bool	PointInRect (TModelUnit x, TModelUnit y, const TModelRect &rc)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Types inherited from CLayoutTrack
enum	EIconID { eIcon_Close = 0 , eIcon_Expand , eIcon_Content , eIcon_Layout , eIcon_Settings , eIcon_Help , eIcon_MaxTrackIconID = 100 }
	Icon id used in layout track. More...

typedef int	TIconID
	use int as TIconID instead of EIconID. More...

typedef string	TIconAlias
	the icon alias used as a key More...

typedef vector< SIconInfo >	TIcons

Static Protected Member Functions inherited from CLayoutTrack
static void	RegisterCommonIconImages ()
	register images for the common icons. More...

static bool	InitIconTextures ()
	initialize OpenGL ttexture objects for icons. More...

Detailed Description

File Description:

CGlyphContainer - a glyph container in the form of layout track. An object of CGlyphContainer, itself, is a layout track. It contains a set of CSeqGlyphs. The track container is not resposible of creating any contained glyphs. The purpose of CGlyphContainer to form a group of glyphs to make them behave like a single track: movable, collapsible, and closible.

Definition at line 54 of file glyph_container_track.hpp.

Member Typedef Documentation

◆ TComments

typedef vector< CRef<CCommentGlyph> > CGlyphContainer::TComments

Definition at line 57 of file glyph_container_track.hpp.

◆ THighlights

typedef set<string> CGlyphContainer::THighlights

Definition at line 58 of file glyph_container_track.hpp.

◆ TKeyHighlights

typedef map<string, THighlights> CGlyphContainer::TKeyHighlights

Definition at line 59 of file glyph_container_track.hpp.

Constructor & Destructor Documentation

◆ CGlyphContainer() [1/2]

CGlyphContainer::CGlyphContainer ( CRenderingContext * r_cntx )

Definition at line 48 of file glyph_container_track.cpp.

References m_Group, m_Inline, m_Layered, m_Simple, CRef< C, Locker >::Reset(), SetLayoutPolicy(), CSeqGlyph::SetParent(), CSeqGlyph::SetRenderingContext(), and CSimpleLayout::SetVertSpace().

Referenced by CGeneModelTrack::x_AddLandMarkFeaturesLayout().

◆ ~CGlyphContainer()

CGlyphContainer::~CGlyphContainer ( )

virtual

Definition at line 62 of file glyph_container_track.cpp.

◆ CGlyphContainer() [2/2]

CGlyphContainer::CGlyphContainer ( const CGlyphContainer & )

private

prohibited copy constructor and assignment operator.

Member Function Documentation

◆ Accept()

bool CGlyphContainer::Accept ( IGlyphVisitor * visitor )

virtual

Interface for accepting an IGlyphVisitor.

The visitor will be passed to its child glyphs for composite glyph.

Returns: true if continue the traversal and false, otherwise.

Reimplemented from CSeqGlyph.

Definition at line 135 of file glyph_container_track.cpp.

References CLayoutGroup::Accept(), CLayoutTrack::m_Expanded, m_Group, and IGlyphVisitor::Visit().

◆ Add()

void CGlyphContainer::Add ( CSeqGlyph * obj )

inline

Append a layout object to the end.

Definition at line 164 of file glyph_container_track.hpp.

References m_Group, and CLayoutGroup::PushBack().

Referenced by CTrackContainer::AddTrackProxy(), CTrackContainer::SetTrack(), CFeatureTrack::x_AddHistogram(), CGeneModelTrack::x_AddLandMarkFeaturesLayout(), CSnpTrack::x_AddSnpsLayout(), CSixFramesTransTrack::x_AddTranslations(), CLDBlockTrack::x_CreateLayout(), CHapmapTrack::x_CreateLayout(), CTrackContainer::x_MakeTopLevelTracks(), CGraphTrack::x_OnJobCompleted(), CBinsTrack::x_ProcessBinsJobResult(), CTrackContainer::x_ShowTrack(), and CSixFramesTransTrack::x_UpdateData().

◆ Empty()

bool CGlyphContainer::Empty ( void ) const

inline

Definition at line 198 of file glyph_container_track.hpp.

References x_Empty().

◆ GetChildren()

const CLayoutGroup::TObjectList & CGlyphContainer::GetChildren ( void ) const

inline

Definition at line 194 of file glyph_container_track.hpp.

References CLayoutGroup::GetChildren(), and m_Group.

Referenced by CBinsTrack::GetHTMLActiveAreas(), CGraphOverlay::GetHTMLActiveAreas(), CTrackContainer::HasSubtracks(), CGraphTrack::InitHTMLActiveArea(), CVarTrack::InitHTMLActiveArea(), CVcfTrack::InitHTMLActiveArea(), CGraphOverlay::MoveTrackOut(), CAllOtherFeaturesTrack::NoSubtrackEver(), CTrackContainer::NoSubtrackEver(), CLayoutTrackHandler::OnLeftDown(), CAlignmentTrack::x_AddAlignStatLayout(), CGeneModelTrack::x_AddMainFeaturesLayout(), CFeatureTrack::x_AdjustFeatureLayout(), CGraphTrack::x_CollectAllGraphs(), CFeaturePanel::x_Empty(), CDataTrack::x_OnAllJobsFinished(), CGeneModelTrack::x_OnAllJobsFinished(), CSegmentMapTrack::x_OnJobCompleted(), CGraphOverlay::x_OnLayoutChanged(), CGraphTrack::x_OnLayoutChanged(), CGraphTrack::x_OnSettingsIconClicked(), and CTrackContainer::x_UpdateMsg().

◆ GetGroup()

const CLayoutGroup & CGlyphContainer::GetGroup ( void ) const

inline

Definition at line 186 of file glyph_container_track.hpp.

References m_Group.

Referenced by GetHTMLActiveAreas(), CGraphOverlay::GetHTMLActiveAreas(), CTrackContainer::GetHTMLActiveAreas(), CAlnVecRow::GetTrackCount(), CGraphTrack::SetLayout(), CAlignmentTrack::x_AddAlignStatLayout(), CFeatureTrack::x_AddFeaturesLayout(), CGraphTrack::x_CollectAllGraphs(), CFeaturePanel::x_Draw(), x_GetHistMsg(), CGraphOverlay::x_OnLayoutChanged(), and CGraphTrack::x_OnLayoutChanged().

◆ GetHighlights()

const CGlyphContainer::THighlights & CGlyphContainer::GetHighlights ( void ) const

inline

Definition at line 172 of file glyph_container_track.hpp.

References m_Highlights.

Referenced by CGeneModelTrack::x_AddLandMarkFeaturesLayout(), CGeneModelTrack::x_AddMainFeaturesLayout(), CSegmentMapTrack::x_AddSegmentMapLayout(), CGeneModelTrack::x_InitFeature_Recursive(), CFeatureTrack::x_InitGlyphs_Recursive(), CGeneModelTrack::x_NeedHighlight(), CSegmentMapTrack::x_NeedHighlight(), CFeatureTrack::x_NeedHighlight(), and CGeneModelTrack::x_UpdateData().

◆ GetHighlightsByKey()

const CGlyphContainer::TKeyHighlights & CGlyphContainer::GetHighlightsByKey ( ) const

inline

Definition at line 176 of file glyph_container_track.hpp.

References m_KeyHighlights.

Referenced by CGeneModelTrack::x_AddLandMarkFeaturesLayout(), CGeneModelTrack::x_AddMainFeaturesLayout(), CGeneModelTrack::x_InitFeature_Recursive(), CGeneModelTrack::x_NeedHighlight(), and CGeneModelTrack::x_UpdateData().

◆ GetHTMLActiveAreas()

void CGlyphContainer::GetHTMLActiveAreas ( TAreaVector * ) const

virtual

Get html active areas.

This function is for CGI mode only. By default, it does nothing.

Reimplemented from CSeqGlyph.

Reimplemented in CGeneModelTrack, CAlignmentTrack, CTrackContainer, CTraceGraphTrack, CIntronTrack, CGraphTrack, CGraphOverlay, and CBinsTrack.

Definition at line 98 of file glyph_container_track.cpp.

References copy(), ctll::empty(), GetGroup(), CLayoutGroup::GetHTMLActiveAreas(), CLayoutTrack::GetId(), and NON_CONST_ITERATE.

Referenced by CBinsTrack::GetHTMLActiveAreas(), CGraphTrack::GetHTMLActiveAreas(), CIntronTrack::GetHTMLActiveAreas(), CTraceGraphTrack::GetHTMLActiveAreas(), CAlignmentTrack::GetHTMLActiveAreas(), and CGeneModelTrack::GetHTMLActiveAreas().

◆ GetTypeInfo()

const CTrackTypeInfo & CGlyphContainer::GetTypeInfo ( void ) const

virtual

Implements CLayoutTrack.

Reimplemented in CVcfTrack, CSixFramesTransTrack, CGeneModelTrack, CVarTrack, CAlignmentTrack, CTrackContainer, CTraceGraphTrack, CSequenceTrack, CSeqTableGraphTrack, CSegmentMapTrack, CScaffoldTrack, CGraphTrack, CGraphOverlay, CFeatureTrack, CFeaturePanel, CExternalLayoutTrack, CEpigenomicsTrack, CComponentTrack, CAllOtherFeaturesTrack, CAggregateFeatureTrack, CSnpTrack, CLDBlockTrack, CHapmapTrack, and CBinsTrack.

Definition at line 388 of file glyph_container_track.cpp.

References m_TypeInfo.

◆ HitTest()

CRef< CSeqGlyph > CGlyphContainer::HitTest ( const TModelPoint & p )

virtual

Hit testing.

Test whether a given point in PARENT's COORD. SYSTEM falls inside this layout object. Recursive hit testing may happen if this layout object is a container of other layout objects.

Returns: the object that gets hit.

Reimplemented from CSeqGlyph.

Reimplemented in CSequenceTrack, CGraphOverlay, and CFeaturePanel.

Definition at line 66 of file glyph_container_track.cpp.

References CLayoutGroup::HitTest(), CSeqGlyph::IsIn(), m_Group, CRef< C, Locker >::Reset(), CLayoutTrack::x_HitTitleBar(), and CSeqGlyph::x_Parent2Local().

Referenced by CFeaturePanel::HitTest().

◆ HitTestHor()

bool CGlyphContainer::HitTestHor	(	TSeqPos	x,
		const CObject *	obj
	)

virtual

Reimplemented from CSeqGlyph.

Reimplemented in CFeaturePanel.

Definition at line 81 of file glyph_container_track.cpp.

References CLayoutGroup::HitTestHor(), CSeqGlyph::IsInHor(), and m_Group.

Referenced by CFeaturePanel::HitTestHor().

◆ Intersects()

bool CGlyphContainer::Intersects	(	const TModelRect &	rect,
		TConstObjects &	objs
	)		const

virtual

Intersect testing.

Test weather a given rectangular area intersects with this layout object. Recursive intersect testing is necessary if the layout object is a container of other containers. All the intersected leaf objects will be added into objs. The rect is in parent's coord system.

Reimplemented from CSeqGlyph.

Definition at line 86 of file glyph_container_track.cpp.

References CSeqGlyph::GetModelRect(), CGlRect< T >::Intersects(), CLayoutGroup::Intersects(), m_Group, and CSeqGlyph::x_Parent2Local().

Referenced by CSeqGraphicRenderer::SelectObjByRect().

◆ operator=()

CGlyphContainer& CGlyphContainer::operator= ( const CGlyphContainer & )

private

◆ ResetCommentGlyph()

void CGlyphContainer::ResetCommentGlyph ( )

inline

Definition at line 98 of file glyph_container_track.hpp.

References m_Comments.

◆ ResetLabelGlyph()

void CGlyphContainer::ResetLabelGlyph ( )

inline

Definition at line 101 of file glyph_container_track.hpp.

References m_Labels.

Referenced by CGeneModelTrack::x_AddMainFeaturesLayout().

◆ SetChildren()

CLayoutGroup::TObjectList & CGlyphContainer::SetChildren ( void )

inline

Definition at line 190 of file glyph_container_track.hpp.

References m_Group, and CLayoutGroup::SetChildren().

Referenced by CTrackContainer::MoveDown(), CTrackContainer::MoveUp(), CGraphTrack::SetLayout(), CTrackContainer::SortChildTracksByOrder(), CFeaturePanel::Update(), CAlignmentTrack::x_AddGraphLayout(), CEpigenomicsTrack::x_AddGraphs(), CGeneModelTrack::x_AddMainFeaturesLayout(), CSegmentMapTrack::x_AddSegmentMapLayout(), CFeatureTrack::x_AdjustFeatureLayout(), CGraphOverlay::x_OnLayoutChanged(), CGraphTrack::x_OnLayoutChanged(), CGraphTrack::x_UpdateBoundingBox(), and CGraphOverlay::x_UpdateTrackSettings().

◆ SetCommentGlyphs()

void CGlyphContainer::SetCommentGlyphs	(	const CSeqGlyph::TObjects &	objs,
		CRef< CCommentConfig >	config
	)

Definition at line 215 of file glyph_container_track.cpp.

References m_Comments, CSeqGlyph::m_Context, NON_CONST_ITERATE, CCommentGlyph::SetConfig(), CSeqGlyph::SetParent(), and CSeqGlyph::SetRenderingContext().

Referenced by CVarTrack::x_UpdateData(), and CVcfTrack::x_UpdateData().

◆ SetComments()

void CGlyphContainer::SetComments ( const string & comment_str )

virtual

set comments.

Parameters

comment_str is a string consisting of one or more comments in the form of: comment1|pos1|comment2|pos2... Each comment has to come with a position, and the comment and position alternate in the comment_str separated by '|'.

Reimplemented from CLayoutTrack.

Definition at line 160 of file glyph_container_track.cpp.

References CSeqGraphicConfig::GetCommentConfig(), label, m_Comments, CSeqGlyph::m_Context, NStr::StringToDouble(), CTrackUtils::TokenizeWithEscape(), and CLayoutTrack::x_GetGlobalConfig().

◆ SetGroup()

CLayoutGroup & CGlyphContainer::SetGroup ( void )

inline

Definition at line 182 of file glyph_container_track.hpp.

References m_Group.

Referenced by CDummyTrack::CDummyTrack(), CTrackContainer::ClearTracks(), CTrackContainer::CloseTrack(), CTrackContainer::RemoveEmptyTracks(), CTrackContainer::RemoveTrack(), CFeaturePanel::SetExternalGlyphs(), CGraphTrack::SetLayout(), CTrackContainer::SetTrack(), CAlignmentTrack::x_AddAlignmentLayout(), CAlignmentTrack::x_AddAlignStatLayout(), CFeatureTrack::x_AddFeaturesLayout(), CAlignmentTrack::x_AddGraphLayout(), CEpigenomicsTrack::x_AddGraphs(), CGeneModelTrack::x_AddLandMarkFeaturesLayout(), CGeneModelTrack::x_AddMainFeaturesLayout(), CSegmentMapTrack::x_AddSegmentMapLayout(), CSixFramesTransTrack::x_AddTranslations(), CFeatureTrack::x_AdjustFeatureLayout(), CLayoutTrackHandler::x_MoveTrackDownRecursive(), CLayoutTrackHandler::x_MoveTrackUpRecursive(), CGraphTrack::x_OnJobCompleted(), CGraphOverlay::x_OnLayoutChanged(), CGraphTrack::x_OnLayoutChanged(), CAlignmentTrack::x_OnLayoutPolicyChanged(), CLayoutTrackHandler::x_StartMoving(), CGraphTrack::x_UpdateBoundingBox(), CDummyTrack::x_UpdateBoundingBox(), CTraceGraphTrack::x_UpdateData(), CAlignmentTrack::x_UpdateData(), CSixFramesTransTrack::x_UpdateData(), CGraphOverlay::x_UpdateTrackSettings(), and CAlignmentTrack::~CAlignmentTrack().

◆ SetHighlights()

void CGlyphContainer::SetHighlights ( const string & hl_str )

virtual

set a list of 'object' need to be highlighted.

Parameters

hl_str is a string consisting of one or more labels (track-specific) representing objects

Reimplemented from CLayoutTrack.

Definition at line 189 of file glyph_container_track.cpp.

References set< Key, Compare >::clear(), map_checker< Container >::insert(), set< Key, Compare >::insert(), ncbi::grid::netcache::search::fields::key, m_Highlights, m_KeyHighlights, NON_CONST_ITERATE, CTrackUtils::TokenizeWithEscape(), NStr::ToLower(), and NStr::TruncateSpacesInPlace().

◆ SetLabelGlyphs()

void CGlyphContainer::SetLabelGlyphs	(	const CSeqGlyph::TObjects &	objs,
		CRef< CCommentConfig >	config
	)

Definition at line 233 of file glyph_container_track.cpp.

References CSeqGlyph::m_Context, m_Labels, NON_CONST_ITERATE, CCommentGlyph::SetConfig(), CSeqGlyph::SetParent(), and CSeqGlyph::SetRenderingContext().

Referenced by CGeneModelTrack::x_AddLandMarkFeaturesLayout().

◆ SetLayoutPolicy()

void CGlyphContainer::SetLayoutPolicy ( ILayoutPolicy * policy )

inline

Set policy on how to deploy the layout of its children.

Definition at line 202 of file glyph_container_track.hpp.

References m_Group, and CLayoutGroup::SetLayoutPolicy().

Referenced by CAlignmentTrack::CAlignmentTrack(), CEpigenomicsTrack::CEpigenomicsTrack(), CExternalLayoutTrack::CExternalLayoutTrack(), CFeaturePanel::CFeaturePanel(), CGlyphContainer(), CGraphTrack::CGraphTrack(), CSegmentMapTrack::CSegmentMapTrack(), CSequenceTrack::CSequenceTrack(), CSixFramesTransTrack::CSixFramesTransTrack(), CSnpTrack::CSnpTrack(), CTraceGraphTrack::CTraceGraphTrack(), CVcfTrack::CVcfTrack(), CGraphTrack::SetLayout(), CFeatureTrack::x_AddHistogram(), CGeneModelTrack::x_AddLandMarkFeaturesLayout(), CGeneModelTrack::x_AddMainFeaturesLayout(), CFeatureTrack::x_AdjustFeatureLayout(), CLDBlockTrack::x_CreateLayout(), CGraphTrack::x_OnJobCompleted(), CAlignmentTrack::x_OnLayoutPolicyChanged(), and CGraphOverlay::x_UpdateBoundingBox().

◆ SetObjects()

void CGlyphContainer::SetObjects ( const CLayoutGroup::TObjectList & objs )

inline

Definition at line 168 of file glyph_container_track.hpp.

References m_Group, and CLayoutGroup::Set().

Referenced by CFeaturePanel::SetExternalGlyphs(), CFeatureTrack::x_AddFeaturesLayout(), CEpigenomicsTrack::x_AddGraphs(), CGeneModelTrack::x_AddLandMarkFeaturesLayout(), CGeneModelTrack::x_AddMainFeaturesLayout(), CSegmentMapTrack::x_AddSegmentMapLayout(), CSixFramesTransTrack::x_AddTranslations(), CLDBlockJob::x_LoadFtable(), CGraphTrack::x_OnJobCompleted(), and CVcfTrack::x_OnJobCompleted().

◆ Update()

void CGlyphContainer::Update ( bool )

virtual

Update content and layout including the bounding box.

Parameters

layout_only if true only update the layout not the content. May need to update the layout only under certain situation, e.g. selection. The update is recursive if this is a container layout. By default, it updates the bounding box only.

Reimplemented from CSeqGlyph.

Reimplemented in CDummyTrack, CSixFramesTransTrack, CFeaturePanel, and CDataTrack.

Definition at line 118 of file glyph_container_track.cpp.

References CSeqGlyph::m_Context, CLayoutTrack::m_Expanded, m_Group, m_Layered, CLayoutTrack::m_On, max(), CRenderingContext::ScreenToSeq(), CLayeredLayout::SetMinDist(), CLayoutGroup::Update(), and x_UpdateBoundingBox().

Referenced by CFeaturePanel::SetExternalGlyphs(), CDataTrack::Update(), CTrackContainer::x_ReinitTrack(), CTrackContainer::x_UpdateData(), and CDataTrack::x_UpdateLayout().