NCBI C++ ToolKit
CGnomonAnnotator_Base Member List

This is the complete list of members for CGnomonAnnotator_Base, including all inherited members.

CGnomonAnnotator_Base()CGnomonAnnotator_Base
EnableSeqMasking()CGnomonAnnotator_Base
GetGnomon()CGnomonAnnotator_Base
m_confirmed_bases_lenCGnomonAnnotator_Baseprotected
m_confirmed_bases_orig_lenCGnomonAnnotator_Baseprotected
m_contig_accCGnomonAnnotator_Baseprotected
m_edited_contig_mapCGnomonAnnotator_Baseprotected
m_editing_indelsCGnomonAnnotator_Baseprotected
m_gnomonCGnomonAnnotator_Baseprotected
m_hmm_paramsCGnomonAnnotator_Baseprotected
m_inserted_seqsCGnomonAnnotator_Baseprotected
m_limitsCGnomonAnnotator_Baseprotected
m_maskingCGnomonAnnotator_Baseprotected
m_notbridgeable_gaps_lenCGnomonAnnotator_Baseprotected
m_pcsf_dataCGnomonAnnotator_Baseprotected
m_pcsf_factorCGnomonAnnotator_Baseprotected
m_pcsf_sliceCGnomonAnnotator_Baseprotected
m_replaced_basesCGnomonAnnotator_Baseprotected
m_replacementsCGnomonAnnotator_Baseprotected
m_reversed_correctionsCGnomonAnnotator_Baseprotected
MapAlignmentsToEditedContig(TAlignModelList &alignments) constCGnomonAnnotator_Base
MapModelsToEditedContig(TGeneModelList &models) constCGnomonAnnotator_Base
MapModelsToOrigContig(TGeneModelList &models) constCGnomonAnnotator_Base
MapOneModelToEditedContig(const CGeneModel &align) constCGnomonAnnotator_Baseprotected
MapOneModelToOrigContig(const CGeneModel &srcmodel) constCGnomonAnnotator_Baseprotected
SetGenomic(const CResidueVec &seq)CGnomonAnnotator_Base
SetGenomic(const CSeq_id &seqid, objects::CScope &scope, const string &mask_annots=kEmptyStr, const TGeneModelList *models=0)CGnomonAnnotator_Base
SetGenomic(const CSeq_id &seqid, objects::CScope &scope, const SCorrectionData &correction_data, TSignedSeqRange range=TSignedSeqRange::GetWhole(), const string &mask_annots=kEmptyStr)CGnomonAnnotator_Base
SetHMMParameters(CHMMParameters *params)CGnomonAnnotator_Base
SetPCSF(const CPhyloCSFData *pcsf_datap)CGnomonAnnotator_Baseinline
TGgapInfo typedefCGnomonAnnotator_Base
TIntMap typedefCGnomonAnnotator_Base
~CGnomonAnnotator_Base()CGnomonAnnotator_Basevirtual
Modified on Wed Apr 17 13:08:24 2024 by modify_doxy.py rev. 669887