Search Toolkit Book for CGraphTrack
#include <gui/widgets/seq_graphic/graph_track.hpp>
Inheritance diagram for CGraphTrack:
Collaboration diagram for CGraphTrack:
Public Member Functions | |
| CGraphTrack (CSGGraphDS *ds, CRenderingContext *r_cntx) | |
| virtual | ~CGraphTrack () |
| virtual CRef< CSGGenBankDS > | GetDataSource () |
| Method for accessing the data source. More... | |
| virtual CConstRef< CSGGenBankDS > | GetDataSource () const |
| virtual void | GetHTMLActiveAreas (TAreaVector *p_areas) const |
| Get html active areas. More... | |
| virtual CHTMLActiveArea * | InitHTMLActiveArea (TAreaVector *p_areas) const |
| Initialize the HTML active area for a track. More... | |
| void | SetAnnot (const string &annot) |
| const string & | GetAnnot () const |
| void | SetLayout (ELayout layout) |
CLayoutTrack public methods. | |
| virtual const CTrackTypeInfo & | GetTypeInfo () const |
ILegendProvide methods. | |
| virtual void | GetLegend (const CTempTrackProxy *track_proxy, objects::CTrackConfig::TLegend &legend) const |
IDroppable virtual methods overloading. | |
| virtual bool | CanDrop (CRef< CLayoutTrack > &track) |
| virtual bool | Drop (CRef< CLayoutTrack > &track) |
| Public Member Functions inherited from CDataTrack | |
| CDataTrack (CRenderingContext *r_cntx) | |
| virtual | ~CDataTrack () |
| virtual void | DeleteAllJobs () |
| virtual bool | AllJobsFinished () const |
| void | OnAJNotification (CEvent *evt) |
| event handlers for job notification event. More... | |
| void | OnAJProgress (CEvent *evt) |
| void | SetVisRange (const TSeqRange &range) |
| virtual void | Update (bool layout_only) |
| Update content and layout including the bounding box. More... | |
| Public Member Functions inherited from CGlyphContainer | |
| CGlyphContainer (CRenderingContext *r_cntx) | |
| virtual | ~CGlyphContainer () |
| void | Add (CSeqGlyph *obj) |
| Append a layout object to the end. More... | |
| void | SetObjects (const CLayoutGroup::TObjectList &objs) |
| virtual void | SetComments (const string &comment_str) |
| set comments. More... | |
| virtual void | SetHighlights (const string &hl_str) |
| set a list of 'object' need to be highlighted. More... | |
| void | SetCommentGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config) |
| void | ResetCommentGlyph () |
| void | SetLabelGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config) |
| void | ResetLabelGlyph () |
| const THighlights & | GetHighlights () const |
| const TKeyHighlights & | GetHighlightsByKey () const |
| CLayoutGroup & | SetGroup () |
| const CLayoutGroup & | GetGroup () const |
| CLayoutGroup::TObjectList & | SetChildren () |
| const CLayoutGroup::TObjectList & | GetChildren () const |
| bool | Empty () const |
| void | SetLayoutPolicy (ILayoutPolicy *policy) |
| Set policy on how to deploy the layout of its children. More... | |
| virtual CRef< CSeqGlyph > | HitTest (const TModelPoint &p) |
| Hit testing. More... | |
| virtual bool | HitTestHor (TSeqPos x, const CObject *obj) |
| virtual bool | Intersects (const TModelRect &rect, TConstObjects &objs) const |
| Intersect testing. More... | |
| virtual bool | Accept (IGlyphVisitor *visitor) |
| Interface for accepting an IGlyphVisitor. More... | |
| Public Member Functions inherited from CLayoutTrack | |
| CLayoutTrack (CRenderingContext *r_cntx) | |
| virtual | ~CLayoutTrack () |
| void | LoadProfile (const string &profile_str) |
| set track profile and load settings. More... | |
| void | SaveProfile () |
| void | SetProfile (const string &preset_style) |
| CLayoutTrack inline method implmentation. More... | |
| const string & | GetProfile () const |
| virtual string | GetFullTitle () const |
| get a more meaningful title. More... | |
| string | GetTitle () const |
| get the track title. More... | |
| const TTrackErrorStatus & | GetErrorStatus () const |
| void | SetErrorStatus (const TTrackErrorStatus &ErrorStatus) |
| bool | isInErrorStatus () const |
| bool | isRmtBased () const |
| bool | isRemotePath () const |
| void | MouseOut () |
| bool | OnMotion (const TModelPoint &pt) |
| bool | GetShowTitle () const |
| void | SetShowTitle (bool flag) |
| void | SetConfig (CRef< CSeqGraphicConfig > conf) |
| int | GetIndent () const |
| void | SetIndent (int indent) |
| void | SetMsg (const string &msg) |
| void | SetParentTrack (CLayoutTrack *parent) |
| CLayoutTrack * | GetParentTrack () |
| const CLayoutTrack * | GetParentTrack () const |
| bool | IsOn () const |
| bool | IsExpanded () const |
| bool | IsMovable () const |
| bool | IsCollapsible () const |
| void | SetShow (bool shown) |
| set the flag only. More... | |
| void | SetExpanded (bool f) |
| void | SetShowFrame (bool show) |
| void | MoveTo (TModelUnit y) |
| void | SetTrackAttr (TTrackAttrFlags flags) |
| void | SetTitle (const string &label, const string &default_title=NcbiEmptyString) |
| void | SetIsBlast (bool isBlast) |
| void | SetHost (ILayoutTrackHost *host) |
| void | SetOrder (int order) |
| int | GetOrder () const |
| void | SetId (const string &id) |
| const string & | GetId () const |
| void | CloseMe () |
| close this track. More... | |
| void | ShowMe () |
| void | Expand (bool expand) |
| Collapse or expand the track. More... | |
| virtual bool | OnLeftDown (const TModelPoint &p) |
| virtual bool | OnLeftDblClick (const TModelPoint &p) |
| virtual bool | NeedTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const |
| Check if need to show tooltip. More... | |
| virtual void | GetTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const |
| Get the tooltip if available. More... | |
| Public Member Functions inherited from CSeqGlyph | |
| CSeqGlyph () | |
| virtual | ~CSeqGlyph () |
| virtual TSeqRange | GetRange (void) const |
| get the total range of this object. More... | |
| virtual bool | SetSelected (bool flag) |
| Select or deselect this glyph. More... | |
| virtual void | SetHideLabel (bool) |
| Force to hide label. More... | |
| virtual bool | HasSideLabel () const |
| Query if there is label and label is on the side. More... | |
| virtual bool | IsClickable () const |
| Query if this glyph is clickable. More... | |
| virtual bool | LessBySeqPos (const CSeqGlyph &obj) const |
| compare this object to another based on glyph sequence position. More... | |
| bool | LessByPos (const CSeqGlyph &obj) const |
| compare this object to another, based on glyph geometry position. More... | |
| bool | LessBySeqSize (const CSeqGlyph &obj) const |
| compare this object to another, based on sequence size. More... | |
| bool | LessBySize (const CSeqGlyph &obj) const |
| compare this object to another, based on geometry size. More... | |
| void | Draw () const |
| render the layout. More... | |
| TModelRect | GetModelRect () const |
| get the bounding box. More... | |
| bool | IsIn (const TModelPoint &p) const |
| Hit test for points in PARENT COORD. More... | |
| bool | IsIn (TModelUnit x, TModelUnit y) const |
| bool | IsInHor (TModelUnit x) const |
| void | SetRender (IGlyphRenderer *renderer) |
| set customized renderer for this layout objects. More... | |
| void | SetRenderingContext (CRenderingContext *context) |
| Set the rendering context. More... | |
| const CRenderingContext * | GetRenderingContext () const |
| Get the rendering context. More... | |
| void | SetTearline (size_t Tearline) |
| tearline factor – used to limit a list of glyphs More... | |
| size_t | GetTearline () const |
| void | SetTearlineText (const string &sTearlineText) |
| tearline text – if set, is appended to the glyph name (does not naffect processing otherwise) More... | |
| string | GetTearlineText () const |
| void | SetRowNum (size_t cur_row) |
| size_t | GetRowNum () const |
| void | SetVisible (size_t v) |
| size_t | GetVisible () const |
| int | GetLevel () const |
| void | SetLevel (int Level) |
| virtual string | GetPName () const |
| persistent name of the glyph should not depend on the instance of the glyph, but should uniquely reflect its contents so two glyphs having the same contents will have the same name currently used to track isDrawn() status for expandable glyphs default implementation returns an empty string implementations exist for CFeatGlyph (name of the contained feature) and CLayoutGroup (concatenation of all sorted children names) More... | |
| float | GetFadeFactor () const |
| virtual bool | OnLeftUp (const TModelPoint &) |
| virtual bool | OnContextMenu (wxContextMenuEvent &event) |
| bool | IsSelected () const |
| bool | IsHighlighted () const |
| CRgbaColor * | GetHighlightsColor () const |
| virtual TModelUnit | GetHeight () const |
| virtual TModelUnit | GetWidth () const |
| virtual TModelUnit | GetLeft () const |
| virtual TModelUnit | GetTop () const |
| virtual TModelUnit | GetRight () const |
| virtual TModelUnit | GetBottom () const |
| const TModelPoint & | GetPos () const |
| void | GetPosInWorld (TModelPoint &pos) const |
| Get top left position in world coordinate. More... | |
| const CSeqGlyph * | GetParent (void) const |
| CSeqGlyph * | GetParent (void) |
| ENeighbours | GetNeighbours () const |
| void | SetHighlighted (bool flag) |
| void | SetHighlightsColor (const CRgbaColor &hl_color) |
| void | SetHighlightsColor (const string &hl_color_str) |
| virtual void | SetWidth (TModelUnit w) |
| virtual void | SetHeight (TModelUnit h) |
| virtual void | SetLeft (TModelUnit l) |
| virtual void | SetTop (TModelUnit b) |
| virtual void | SetPos (const TModelPoint &upper_left) |
| void | SetParent (CSeqGlyph *p) |
| CSeqGlyph * | SetParent (void) |
| void | SetNeighbours (ENeighbours neighbours) |
| Public Member Functions inherited from CObjectEx | |
| CObjectEx (void) | |
| virtual | ~CObjectEx (void) |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
| Public Member Functions inherited from CWeakObject | |
| CWeakObject (void) | |
| virtual | ~CWeakObject (void) |
| CPtrToObjectProxy * | GetPtrProxy (void) const |
| Get pointer to proxy object containing pointer to this object. More... | |
| Public Member Functions inherited from CEventHandler | |
| CEventHandler () | |
| CEventHandler. More... | |
| virtual | ~CEventHandler () |
| virtual void | AddListener (CEventHandler *listener, int pool_name=ePool_Default) |
| Add a listener. More... | |
| virtual void | RemoveListener (CEventHandler *listener) |
| Remove a listener. More... | |
| virtual void | RemoveAllListeners (void) |
| virtual bool | HasListener (CEventHandler *listener, int pool_name=ePool_Default) const |
| returns "true" if the given listener belongs to the specified pool More... | |
| virtual const TListeners * | GetListeners (int pool_name=ePool_Default) const |
| returns a set of listeners fro the specified pool More... | |
| virtual bool | OnEvent (CEvent *evt) |
| Processes en event. Returns "true" if event has been processed. More... | |
| virtual bool | Dispatch (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default) |
| Dispatches an event to the listeners (but does not handle it). More... | |
| virtual bool | Send (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default) |
| Sends an event synchronously. More... | |
| virtual bool | Send (CEvent *evt, int pool_name) |
| void | Post (CRef< CEvent > evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default) |
| Handles an event asynchronously (process and/or dispatch). More... | |
| Public Member Functions inherited from ILegendProvider | |
| virtual | ~ILegendProvider () |
| Public Member Functions inherited from IDroppable | |
| virtual | ~IDroppable () |
Static Public Attributes | |
| static const string | kOverlayed = "_overlayed" |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
Protected Member Functions | |
| objects::SAnnotSelector & | x_GetAnnotSelector () |
| CSGGraphDS & | x_GetGraphDS () |
| bool | CreateOverlay (vector< CRef< CGraphTrack >> &tracks) |
CLayoutTrack virtual methods overloading. | |
| virtual void | x_LoadSettings (const string &preset_style, const TKeyValuePairs &settings) |
| load the track settings. More... | |
| virtual void | x_SaveSettings (const string &preset_style) |
| save part of settings to a profile string. More... | |
| virtual void | x_OnIconClicked (TIconID id) |
| Mouse left-click event handler on an icon. More... | |
| virtual void | x_OnLayoutChanged () |
| update the layout. More... | |
CDataTrack pure virtual interfaces | |
| virtual void | x_UpdateData () |
| update track content. More... | |
| virtual void | x_OnJobCompleted (CAppJobNotification ¬ify) |
CGlyphContainerpure virtual interfaces | |
| virtual void | x_UpdateBoundingBox () |
| Update the bounding box assuming children's sizes are fixed if any. More... | |
| virtual void | x_RenderContent () const |
| The content rendering must be implemented in the derived layout tracks. More... | |
| Protected Member Functions inherited from CDataTrack | |
| DECLARE_EVENT_MAP () | |
| virtual void | x_Expand (bool expand) |
| Collapse or expand the track. More... | |
| void | x_UpdateLayout () |
| const TSeqRange & | x_GetVisRange () const |
| virtual bool | x_IsJobNeeded (CAppJobDispatcher::TJobID id) const |
| virtual void | x_OnJobFailed (CAppJobNotification ¬ify) |
| virtual void | x_OnAllJobsFinished () |
| Protected Member Functions inherited from CGlyphContainer | |
| virtual string | x_GetHistMsg () const |
| Histogram configuration (linear, log, etc) is also on the title bar but multiple track types can have histograms, so we use virtual functinons. More... | |
| virtual bool | x_Empty () const |
| virtual void | x_ClearContent () |
| Protected Member Functions inherited from CLayoutTrack | |
| virtual void | x_Draw () const |
| The default renderer for this layout object. More... | |
| virtual bool | x_ShowTitle () const |
| Need to preserve title space and show the title. More... | |
| TModelUnit | x_GetTBHeight () const |
| Get title bar height including margin. More... | |
| CConstRef< CSeqGraphicConfig > | x_GetGlobalConfig () const |
| Method for getting global configuration from rendering context. More... | |
| void | x_OnLayoutChanged () |
| update the layout. More... | |
| virtual void | x_GetTBRect (TModelRect &rc) const |
| Get title bar rectange exclude top margin. More... | |
| virtual void | x_RenderProgressBar () const |
| Method for rendering the job loading or layout generating progress. More... | |
| virtual void | x_RenderTitleBar () const |
| Method for rendering the track title bar. More... | |
| virtual void | x_RenderIcon (TIconID id, bool highlighted, bool lite_version=false) const |
| Render track icons. More... | |
| virtual int | x_GetIconState (TIconID id) const |
| Get current status for a given button. More... | |
| void | x_RegisterIcon (const SIconInfo &icon) |
| register track icons. More... | |
| void | x_DeregisterIcon (TIconID id) |
| deregister an icon if already registered. More... | |
| void | x_EnableIcon (TIconID id, bool enabled) |
| Enable/disable an existing icon. More... | |
| void | x_ShowIcon (TIconID id, bool shown) |
| Show/hide an existing icon. More... | |
| int | x_HitIconTest (const TModelPoint &p) const |
| hit any icon?. More... | |
| bool | x_HitTitleBar (const TModelPoint &p) const |
| hit the title bar?. More... | |
| void | x_SetStatus (const string &msg, int progress) |
| void | x_SetStartStatus () |
| void | x_SetFinishStatus () |
| bool | x_IsNCBITrack () const |
| Indicates whether the track is NCBI track. More... | |
| Protected Member Functions inherited from CSeqGlyph | |
| virtual void | x_DrawHighlight () const |
| void | x_DrawInnerLabelColumns (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible) const |
| void | x_DrawInnerLabels (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible, bool inside_only, vector< TModelRange > *labels_ranges=nullptr, TSeqRange *interval=nullptr, bool XOR_mode=false) const |
| void | x_DrawTruncatedLabel (const string &label, const CGlTextureFont &font, TModelUnit width, TModelUnit x, TModelUnit y, vector< TModelRange > *labels_ranges=nullptr) const |
| void | x_DrawException () const |
| Draw a shading background to indicate exception. More... | |
| void | x_Parent2Local (TModelPoint &pnt) const |
| Transform the coordiante from parent coord. to local coord. More... | |
| void | x_Parent2Local (TModelUnit &, TModelUnit &y) const |
| Transform the coordiante from parent coord. to local coord. More... | |
| void | x_Parent2Local (TModelRect &rect) const |
| Transform the coordiante from parent coord. to local coord. More... | |
| void | x_World2Local (TModelPoint &p) const |
| Transform the coordiante from world coord. to local coord. More... | |
| void | x_World2Local (TModelUnit &x, TModelUnit &y) const |
| void | x_Local2World (TModelPoint &p) const |
| Transform the coordiantes from local coord. to world coord. More... | |
| void | x_Local2World (TModelUnit &x, TModelUnit &y) const |
| void | x_InitHTMLActiveArea (CHTMLActiveArea &area) const |
| initialize the basic information for a given active area. More... | |
| bool | x_Visible_V () const |
| is this glyph visible in vertical direction? More... | |
| template<class T > | |
| bool | x_IntersectVisible (const CRange< T > &SeqRange, T &from, T &to) const |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
| Protected Member Functions inherited from CWeakObject | |
| void | CleanWeakRefs (void) const |
| Method cleaning all CWeakRefs referencing at this moment to the object After calling to this method all existing CWeakRefs referencing to the object will return NULL, so it effectively will be equal to deleting the object. More... | |
| Protected Member Functions inherited from CEventHandler | |
| virtual const SEvtMap * | GetEventMap () const |
| void | x_DeclareDead () |
| Removes itself unavailable for async event delivery. More... | |
| void | x_AddListenerToPool (CEventHandler *listener, int pool_name) |
Static Protected Member Functions | |
| static CNetICacheClient | s_InitICache () |
| static CNetICacheClient & | s_GetICacheInstance () |
| Static Protected Member Functions inherited from CLayoutTrack | |
| static void | RegisterCommonIconImages () |
| register images for the common icons. More... | |
| static bool | InitIconTextures () |
| initialize OpenGL ttexture objects for icons. More... | |
Private Member Functions | |
| void | x_OnSettingsIconClicked () |
| void | x_InitGrid () |
| void | x_CollectAllGraphs (vector< CRef< CHistogramGlyph >> &graphs) const |
prohibited copy constructor and assignment operator. | |
| CGraphTrack (const CGraphTrack &) | |
| CGraphTrack & | operator= (const CGraphTrack &) |
Static Private Member Functions | |
| static ELayout | x_LayoutStrToValue (const string &layout) |
| static string | x_LayoutValueToStr (ELayout layout) |
Private Attributes | |
| string | m_AnnotName |
| CRef< CSGGraphDS > | m_DS |
| objects::SAnnotSelector | m_Sel |
| bool | m_FixedScale |
| Dynamic or fixed graph scale. More... | |
| CSGGraphDS::TAxisLimits | m_YLimits |
| Graph y limits stored when FixedScale is set. More... | |
| CRef< CHistogramGlyph > | m_Grid |
| ELayout | m_Layout |
Static Private Attributes | |
| static CTrackTypeInfo | m_TypeInfo |
Friends | |
| class | CGraphTrackFactory |
Additional Inherited Members | |
| Static Public Member Functions inherited from CLayoutTrack | |
| static void | RegisterIconImage (const TIconAlias &key, const string &img_file) |
| register the image for an icon. More... | |
| Static Public Member Functions inherited from CSeqGlyph | |
| static bool | PointInRect (const TModelPoint &p, const TModelRect &rc) |
| static bool | PointInRect (TModelUnit x, TModelUnit y, const TModelRect &rc) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Member Functions inherited from CEventHandler | |
| static bool | HandlePostRequest () |
| static void | ClearPostQueue () |
| erases all events from the queue More... | |
| static void | DestroyPostQueue () |
| Protected Types inherited from CLayoutTrack | |
| enum | EIconID { eIcon_Close = 0 , eIcon_Expand , eIcon_Content , eIcon_Layout , eIcon_Settings , eIcon_Help , eIcon_MaxTrackIconID = 100 } |
| Icon id used in layout track. More... | |
| typedef int | TIconID |
| use int as TIconID instead of EIconID. More... | |
| typedef string | TIconAlias |
| the icon alias used as a key More... | |
| typedef vector< SIconInfo > | TIcons |
| Protected Attributes inherited from CGlyphContainer | |
| CLayoutGroup | m_Group |
| CRef< CSimpleLayout > | m_Simple |
| CRef< CInlineLayout > | m_Inline |
| CRef< CLayeredLayout > | m_Layered |
| Protected Attributes inherited from CLayoutTrack | |
| int | m_Order |
| track order number More... | |
| string | m_Id |
| track identifier More... | |
| bool | m_On |
| is this track shown More... | |
| bool | m_ShowFrame |
| need to draw frame, not title More... | |
| bool | m_Expanded |
| is this track in expanded state More... | |
| TIcons | m_Icons |
| registered icon info More... | |
| int | m_HighlightedIcon |
| the highlighted icon index More... | |
| TTrackAttrFlags | m_Attrs |
| various track attributes More... | |
| ILayoutTrackHost * | m_LTHost |
| Top level host owning the tracks. More... | |
| string | m_Title |
| track title More... | |
| bool | m_isBlast {false} |
| true if the track is known to be generated and uploaded by BLAST More... | |
| string | m_DefaultTitle |
| Default track title. More... | |
| string | m_Msg |
| special message need to show on title bar More... | |
| int | m_Progress |
| any job progress index (0 - 100) More... | |
| int | m_IndentLevel |
| track hierachy indentation level. More... | |
| TTrackErrorStatus | m_ErrorStatus |
| CRef< CSeqGraphicConfig > | m_gConfig |
| global configuration. More... | |
| string | m_Profile = "Default" |
| track setting profile More... | |
| Protected Attributes inherited from CSeqGlyph | |
| CSeqGlyph * | m_Parent |
| parent/child relationships for this feature More... | |
| CRenderingContext * | m_Context |
| the rendering context More... | |
| unique_ptr< CRgbaColor > | m_HighlightsColor |
| Highlight color. More... | |
| ENeighbours | m_Neighbours |
| Indicates whether the glyph has neighbours. More... | |
| Protected Attributes inherited from CEventHandler | |
| TPools | m_Pools |
| Static Protected Attributes inherited from CEventHandler | |
| static const SEvtMap | sm_EvtMap |
Detailed Description
CGraphTrack –.
Definition at line 51 of file graph_track.hpp.
Member Enumeration Documentation
◆ ELayout
| enum CGraphTrack::ELayout |
| Enumerator | |
|---|---|
| eLayout_Layered | |
| eLayout_Overlay | |
| eLayout_Overlayed | |
Definition at line 59 of file graph_track.hpp.
Constructor & Destructor Documentation
◆ CGraphTrack() [1/2]
| CGraphTrack::CGraphTrack | ( | CSGGraphDS * | ds, |
| CRenderingContext * | r_cntx | ||
| ) |
Definition at line 101 of file graph_track.cpp.
References CSeq_annot_Base::C_Data::e_Graph, CSeq_annot_Base::C_Data::e_Seq_table, CLayoutTrack::eIcon_Settings, CSeqUtils::GetAnnotSelector(), CSGGraphDS::IsSeqTable(), m_DS, m_Sel, CGlyphContainer::m_Simple, m_YLimits, CSGAnnotJob::TAxisLimits::max, max(), CSGAnnotJob::TAxisLimits::min, min(), CSGGenBankDS::SetJobListener(), CGlyphContainer::SetLayoutPolicy(), and CLayoutTrack::x_RegisterIcon().
◆ ~CGraphTrack()
|
virtual |
Definition at line 124 of file graph_track.cpp.
References CSGGenBankDS::AllJobsFinished(), CSGGenBankDS::DeleteAllJobs(), and m_DS.
◆ CGraphTrack() [2/2]
|
private |
Member Function Documentation
◆ CanDrop()
|
virtual |
◆ CreateOverlay()
|
protected |
Definition at line 744 of file graph_track.cpp.
References _ASSERT, CTrackContainer::AddNewTrack(), CTrackProxy::Clone(), copy(), CTempTrackProxy::GetAnnots(), CTempTrackProxy::GetChildren(), CHistParamsManager::GetHistParams(), CSeqGraphicConfig::GetHistParamsManager(), CTempTrackProxy::GetId(), CTempTrackProxy::GetKey(), CLayoutTrack::GetOrder(), CTempTrackProxy::GetOrder(), CLayoutTrack::GetParentTrack(), CTempTrackProxy::GetSubTracks(), gt, ITERATE, NStr::Join(), m_AnnotName, CLayoutTrack::m_gConfig, NcbiEmptyString, NON_CONST_ITERATE, CTrackContainer::RemoveTrack(), s_FindTrackProxy(), CTempTrackProxy::SetAnnots(), CTempTrackProxy::SetOrder(), and CTempTrackProxy::SetSubTracks().
Referenced by Drop().
◆ Drop()
|
virtual |
Implements IDroppable.
Definition at line 1398 of file graph_track.cpp.
References CreateOverlay(), gt, and Ref().
◆ GetAnnot()
Definition at line 222 of file graph_track.hpp.
References m_AnnotName.
◆ GetDataSource() [1/2]
|
virtual |
Method for accessing the data source.
Implements CDataTrack.
Definition at line 137 of file graph_track.cpp.
References CRef< C, Locker >::GetPointer(), and m_DS.
◆ GetDataSource() [2/2]
|
virtual |
Implements CDataTrack.
Definition at line 143 of file graph_track.cpp.
References CRef< C, Locker >::GetPointer(), and m_DS.
◆ GetHTMLActiveAreas()
|
virtual |
Get html active areas.
This function is for CGI mode only. By default, it does nothing.
Reimplemented from CGlyphContainer.
Definition at line 149 of file graph_track.cpp.
References eLayout_Overlay, eLayout_Overlayed, CGlyphContainer::GetHTMLActiveAreas(), and m_Layout.
◆ GetLegend()
|
virtual |
Implements ILegendProvider.
Definition at line 1159 of file graph_track.cpp.
References _ASSERT, CHistParamsManager::AddSettings(), color, CHistParams::eHistogram, NStr::EqualNocase(), ERR_POST, Error(), NStr::fConvErr_NoThrow, CRgbaColor::FromString(), CHistParamsManager::GetDefHistParams(), CHistParamsManager::GetHistParams(), CSeqGraphicConfig::GetHistParamsManager(), CTempTrackProxy::GetSource(), CTempTrackProxy::GetTrackProfile(), CHistParamsManager::HasSettings(), ITERATE, label, LOG_POST, m_AnnotName, CHistParams::m_fgColor, CLayoutTrack::m_gConfig, min(), CSGConfigUtils::ParseProfileString(), CRef< C, Locker >::Reset(), CRgbaColor::SetAlpha(), NStr::StringToInt(), CRgbaColor::ToString(), CHistParams::TypeStrToValue(), and CHistParams::TypeValueToStr().
◆ GetTypeInfo()
|
virtual |
Reimplemented from CGlyphContainer.
Reimplemented in CSeqTableGraphTrack.
Definition at line 132 of file graph_track.cpp.
References m_TypeInfo.
◆ InitHTMLActiveArea()
|
virtual |
Initialize the HTML active area for a track.
- Returns
- retrun the newly added HTML active area for this track if further initializatin is required.
Reimplemented from CLayoutTrack.
Definition at line 157 of file graph_track.cpp.
References bound(), ctll::empty(), CHTMLActiveArea::fNoNavigation, CHTMLActiveArea::fTrack, CGlyphContainer::GetChildren(), CLayoutTrack::GetId(), CLayoutTrack::InitHTMLActiveArea(), CSeqUtils::isRmtAnnotName(), m_AnnotName, CHTMLActiveArea::m_Bounds, CHTMLActiveArea::m_Descr, CHTMLActiveArea::m_Flags, CLayoutTrack::m_Title, ncbi::grid::netcache::search::fields::size, CLayoutTrack::x_GetTBHeight(), and CSeqGlyph::x_InitHTMLActiveArea().
◆ operator=()
|
private |
◆ s_GetICacheInstance()
|
staticprotected |
Definition at line 236 of file graph_track.cpp.
References s_InitICache().
Referenced by x_LoadSettings(), and x_OnJobCompleted().
◆ s_InitICache()
|
staticprotected |
Definition at line 228 of file graph_track.cpp.
References CNcbiApplicationAPI::GetConfig(), IRegistry::GetString(), and CNcbiApplication::Instance().
Referenced by s_GetICacheInstance().
◆ SetAnnot()
Definition at line 197 of file graph_track.cpp.
References CSeqUtils::eAnnot_Unnamed, m_AnnotName, m_Sel, CSeqUtils::NameTypeStrToValue(), and NStr::StartsWith().
◆ SetLayout()
| void CGraphTrack::SetLayout | ( | ELayout | layout | ) |
Definition at line 1309 of file graph_track.cpp.
References eLayout_Layered, eLayout_Overlay, eLayout_Overlayed, CHistogramGlyph::eMode_Single, g(), CLayoutGroup::GetChildren(), CGlyphContainer::GetGroup(), CRef< C, Locker >::GetPointer(), CHistogramGlyph::GetTitle(), kOverlayed, label, lg(), m_AnnotName, CSeqGlyph::m_Context, CGlyphContainer::m_Layered, m_Layout, CGlyphContainer::m_Simple, NON_CONST_ITERATE, CLayoutGroup::PushBack(), Ref(), CHistogramGlyph::SetAnnotName(), CGlyphContainer::SetChildren(), CLayoutGroup::SetChildren(), CGlyphContainer::SetGroup(), CGlyphContainer::SetLayoutPolicy(), CLayoutGroup::SetLayoutPolicy(), CSeqGlyph::SetParent(), CSeqGlyph::SetRenderingContext(), CHistogramGlyph::SetRenderingMode(), CDataTrack::Update(), and CSeqGlyph::Update().
◆ x_CollectAllGraphs()
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private |
Definition at line 1410 of file graph_track.cpp.
References g(), CGlyphContainer::GetChildren(), CGlyphContainer::GetGroup(), lg(), and Ref().
Referenced by x_OnSettingsIconClicked().
◆ x_GetAnnotSelector()
|
inlineprotected |
Definition at line 228 of file graph_track.hpp.
References m_Sel.
Referenced by CSeqTableGraphTrack::CSeqTableGraphTrack().
◆ x_GetGraphDS()
|
inlineprotected |
Definition at line 234 of file graph_track.hpp.
References m_DS.
◆ x_InitGrid()
|
private |
Definition at line 1381 of file graph_track.cpp.
References CSeqGlyph::m_Context, m_Grid, NcbiEmptyString, CRef< C, Locker >::Reset(), CSeqGlyph::SetRenderingContext(), and CHistogramGlyph::SetShowTitle().
Referenced by x_OnLayoutChanged(), and x_UpdateBoundingBox().
◆ x_LayoutStrToValue()
|
staticprivate |
Definition at line 242 of file graph_track.cpp.
References eLayout_Layered, eLayout_Overlay, and NStr::EqualNocase().
Referenced by x_LoadSettings().
◆ x_LayoutValueToStr()
|
staticprivate |
Definition at line 251 of file graph_track.cpp.
References eLayout_Layered, and eLayout_Overlay.
Referenced by x_SaveSettings().
◆ x_LoadSettings()
|
protectedvirtual |
load the track settings.
By default, it does nothing.
- Parameters
-
preset_style a preset setting style name settings a list of track-specific setting in a form of key-value pair.
Reimplemented from CLayoutTrack.
Definition at line 265 of file graph_track.cpp.
References _ASSERT, CHistParamsManager::AddSettings(), color, CTrackConfigUtils::DecodeValueRange(), NStr::EqualNocase(), ERR_POST, Error(), eSerial_AsnBinary, CHistParams::eSmearBar, NStr::fConvErr_NoThrow, CRWStreambuf::fOwnReader, CRgbaColor::FromString(), CSeqGraphicConfig::GetCgiMode(), CUser_field_Base::GetData(), CHistParamsManager::GetDefHistParams(), COpenRange< Position >::GetEmptyFrom(), COpenRange< Position >::GetEmptyTo(), CUser_object::GetField(), CRange_Base::GetFrom(), CHistParamsManager::GetHistParams(), CSeqGraphicConfig::GetHistParamsManager(), CNetICacheClient::GetReadStream(), CUser_field_Base::C_Data::GetReal(), CRange_Base::GetTo(), CNetICacheClient::HasBlobs(), CUser_object::HasField(), CHistParamsManager::HasSettings(), ITERATE, ncbi::grid::netcache::search::fields::key, kNegColor, kNumBins, kOutlierColor, kScale, kSDeviationThreshold, kStoredScale, kValueRange, CRgbaColor::Lighten(), LOG_POST, m_AnnotName, CHistParams::m_bgColor, CHistParams::m_ClipOutliers, SCustomizedHistSettings::m_Color, CHistParams::m_DrawBg, CHistParams::m_fgColor, CHistParams::m_fgNegColor, CHistParams::m_FitStep, m_FixedScale, CLayoutTrack::m_gConfig, CHistParams::m_Height, SCustomizedHistSettings::m_Height, m_Layout, CHistParams::m_NumBins, CHistParams::m_OutlierColor, CHistParams::m_RangeAutoscale, CHistParams::m_Scale, CHistParams::m_SDeviationThreshold, CHistParams::m_SmearColorMax, CHistParams::m_SmearColorMin, CHistParams::m_SmoothCurve, CHistParams::m_StoredScale, CHistParams::m_Type, SCustomizedHistSettings::m_Type, CHistParams::m_ValueRange, m_YLimits, CSGAnnotJob::TAxisLimits::max, max(), CSGAnnotJob::TAxisLimits::min, min(), NcbiEmptyString, CObjectIStream::Open(), Ref(), CRef< C, Locker >::Reset(), s_GetCacheKey(), s_GetICacheInstance(), CHistParams::ScaleStrToValue(), COpenRange< Position >::Set(), CRgbaColor::SetAlpha(), CRange_Base::SetFrom(), CRange_Base::SetTo(), NStr::StringToBool(), NStr::StringToInt(), NStr::StringToNonNegativeInt(), CHistParams::TypeStrToValue(), and x_LayoutStrToValue().
◆ x_OnIconClicked()
|
protectedvirtual |
Mouse left-click event handler on an icon.
In this class, only clicks on close and expand icons are handled. Any other icons are very likely track-specific, so they need to be handled in the derived tracks.
Reimplemented from CLayoutTrack.
Definition at line 487 of file graph_track.cpp.
References CLayoutTrack::eIcon_Settings, CLayoutTrack::x_OnIconClicked(), and x_OnSettingsIconClicked().
◆ x_OnJobCompleted()
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protectedvirtual |
Implements CDataTrack.
Definition at line 507 of file graph_track.cpp.
References _ASSERT, CGlyphContainer::Add(), CUser_object::AddField(), CLayoutGroup::Clear(), CSGGenBankDS::ClearJobID(), count, eLayout_Overlay, eLayout_Overlayed, CHistogramGlyph::eMode_Overlay, CHistogramGlyph::eMode_Single, ERR_POST, Error(), eSerial_AsnBinary, CRWStreambuf::fOwnWriter, CHistogramGlyph::GetAnnotName(), CHistogramGlyph::GetAxisMax(), CHistogramGlyph::GetAxisMin(), CSeqGraphicConfig::GetCgiMode(), CAppJobNotification::GetJobID(), CRef< C, Locker >::GetPointer(), CAppJobNotification::GetResult(), CHistogramGlyph::GetTitle(), CNetICacheClient::GetWriteStream(), i, ncbi::grid::netcache::search::fields::key, kOverlayed, label, m_AnnotName, m_DS, CLayoutTrack::m_gConfig, CGlyphContainer::m_Layered, m_Layout, CGlyphContainer::m_Simple, CLayoutTrack::m_Title, m_YLimits, CSGAnnotJob::TAxisLimits::max, max(), CSGAnnotJob::TAxisLimits::min, min(), msg(), NcbiEmptyString, NON_CONST_ITERATE, CObjectOStream::Open(), CLayoutGroup::PushBack(), Ref(), result, s_GetCacheKey(), s_GetICacheInstance(), CHistogramGlyph::SetAnnotName(), CHistogramGlyph::SetConfig(), CHistogramGlyph::SetDesc(), CGlyphContainer::SetGroup(), CGlyphContainer::SetLayoutPolicy(), CLayoutGroup::SetLayoutPolicy(), CLayoutTrack::SetMsg(), CGlyphContainer::SetObjects(), CHistogramGlyph::SetRenderingMode(), CUser_object_Base::SetType(), NStr::SizetToString(), NStr::StartsWith(), CLayoutTrack::x_GetGlobalConfig(), and CDataTrack::x_UpdateLayout().
◆ x_OnLayoutChanged()
|
protectedvirtual |
update the layout.
Reimplemented from CSeqGlyph.
Definition at line 1225 of file graph_track.cpp.
References eLayout_Overlay, eLayout_Overlayed, CHistogramGlyph::eMode_Overlay, CGlyphContainer::GetChildren(), CGlyphContainer::GetGroup(), CHistogramGlyph::GetMax(), CHistogramGlyph::GetMin(), kOverlayed, m_AnnotName, m_Grid, m_Layout, max(), min(), NON_CONST_ITERATE, CHistogramGlyph::SetAnnotName(), CHistogramGlyph::SetAxisMax(), CHistogramGlyph::SetAxisMin(), CHistogramGlyph::SetAxisRange(), CGlyphContainer::SetChildren(), CHistogramGlyph::SetFixedScale(), CGlyphContainer::SetGroup(), CHistogramGlyph::SetRenderingMode(), ncbi::grid::netcache::search::fields::size, x_InitGrid(), and CLayoutTrack::x_OnLayoutChanged().
◆ x_OnSettingsIconClicked()
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private |
Definition at line 639 of file graph_track.cpp.
References _ASSERT, CTrackContainer::AddTrackProxy(), eLayout_Layered, ERASE_ITERATE, CGlyphContainer::GetChildren(), CTempTrackProxy::GetChildren(), CLayoutTrack::GetOrder(), CLayoutTrack::GetParentTrack(), CRef< C, Locker >::GetPointer(), CTrackContainer::GetSubtrackProxies(), CTempTrackProxy::GetTrack(), gt, i, ITERATE, ILayoutTrackHost::LTH_PopupMenu(), m_FixedScale, CLayoutTrack::m_LTHost, CTrackContainer::MoveTrack(), NON_CONST_ITERATE, CTrackContainer::RemoveTrack(), CRef< C, Locker >::Reset(), s_FindTrackProxy(), ToWxString(), CDataTrack::Update(), UseDefaultMarginWidth(), VECTOR_ERASE, wxT, x_CollectAllGraphs(), and x_UpdateData().
Referenced by x_OnIconClicked().
◆ x_RenderContent()
|
protectedvirtual |
The content rendering must be implemented in the derived layout tracks.
Reimplemented from CGlyphContainer.
Definition at line 1298 of file graph_track.cpp.
References CHistogramGlyph::DrawGrid(), eLayout_Overlay, COpenRange< Position >::Empty(), CSeqGlyph::GetHeight(), CRenderingContext::IntersectVisible(), CSeqGlyph::m_Context, m_Grid, m_Layout, and CGlyphContainer::x_RenderContent().
◆ x_SaveSettings()
save part of settings to a profile string.
Only the potential settings changed by users will be saved.
Reimplemented from CLayoutTrack.
Definition at line 475 of file graph_track.cpp.
References NStr::BoolToString(), NStr::Join(), kDefaultFixedScale, kDefaultLayout, m_FixedScale, m_Layout, NcbiEmptyString, CLayoutTrack::SetProfile(), and x_LayoutValueToStr().
◆ x_UpdateBoundingBox()
|
protectedvirtual |
Update the bounding box assuming children's sizes are fixed if any.
Reimplemented from CGlyphContainer.
Definition at line 1267 of file graph_track.cpp.
References _ASSERT, eLayout_Overlay, COpenRange< Position >::Empty(), CLayoutGroup::GetChildren(), CSeqGlyph::GetHeight(), CSeqGlyph::GetLeft(), CSeqGlyph::GetTop(), CSeqGlyph::GetWidth(), CRenderingContext::IntersectVisible(), CSeqGlyph::m_Context, CLayoutTrack::m_Expanded, CLayoutTrack::m_gConfig, m_Grid, CGlyphContainer::m_Group, m_Layout, CLayoutTrack::m_On, NON_CONST_ITERATE, CGlyphContainer::SetChildren(), CHistogramGlyph::SetConfig(), CGlyphContainer::SetGroup(), CSeqGlyph::SetHeight(), CSeqGlyph::SetLeft(), CSeqGlyph::SetTop(), CSeqGlyph::SetWidth(), x_InitGrid(), and CGlyphContainer::x_UpdateBoundingBox().
◆ x_UpdateData()
|
protectedvirtual |
update track content.
Implements CDataTrack.
Definition at line 499 of file graph_track.cpp.
References CSGGenBankDS::DeleteAllJobs(), CSGGraphDS::LoadSeqGraphs(), m_AnnotName, CSeqGlyph::m_Context, m_DS, m_FixedScale, m_Sel, m_YLimits, CLayoutTrack::x_GetGlobalConfig(), and CLayoutTrack::x_SetStartStatus().
Referenced by x_OnSettingsIconClicked().
Friends And Related Function Documentation
◆ CGraphTrackFactory
|
friend |
Definition at line 56 of file graph_track.hpp.
Member Data Documentation
◆ kOverlayed
Definition at line 66 of file graph_track.hpp.
Referenced by SetLayout(), CGraphOverlay::UpdateTrackParams(), x_OnJobCompleted(), x_OnLayoutChanged(), CGraphOverlay::x_UpdateLegend(), and CGraphOverlay::x_UpdateTrackSettings().
◆ m_AnnotName
|
private |
Definition at line 149 of file graph_track.hpp.
Referenced by CreateOverlay(), GetAnnot(), GetLegend(), InitHTMLActiveArea(), SetAnnot(), SetLayout(), x_LoadSettings(), x_OnJobCompleted(), x_OnLayoutChanged(), and x_UpdateData().
◆ m_DS
|
private |
Definition at line 150 of file graph_track.hpp.
Referenced by CGraphTrack(), GetDataSource(), x_GetGraphDS(), x_OnJobCompleted(), x_UpdateData(), and ~CGraphTrack().
◆ m_FixedScale
|
private |
Dynamic or fixed graph scale.
By default, the graph scale is a dynamic value which is updated within the visible range.
Definition at line 156 of file graph_track.hpp.
Referenced by x_LoadSettings(), x_OnSettingsIconClicked(), x_SaveSettings(), and x_UpdateData().
◆ m_Grid
|
private |
Definition at line 162 of file graph_track.hpp.
Referenced by x_InitGrid(), x_OnLayoutChanged(), x_RenderContent(), and x_UpdateBoundingBox().
◆ m_Layout
|
private |
Definition at line 166 of file graph_track.hpp.
Referenced by GetHTMLActiveAreas(), SetLayout(), x_LoadSettings(), x_OnJobCompleted(), x_OnLayoutChanged(), x_RenderContent(), x_SaveSettings(), and x_UpdateBoundingBox().
◆ m_Sel
|
private |
Definition at line 151 of file graph_track.hpp.
Referenced by CGraphTrack(), SetAnnot(), x_GetAnnotSelector(), and x_UpdateData().
◆ m_TypeInfo
|
staticprivate |
Definition at line 160 of file graph_track.hpp.
Referenced by CGraphTrackFactory::GetExtensionIdentifier(), CGraphTrackFactory::GetExtensionLabel(), CGraphTrackFactory::GetTypeInfo(), and GetTypeInfo().
◆ m_YLimits
|
private |
Graph y limits stored when FixedScale is set.
Definition at line 158 of file graph_track.hpp.
Referenced by CGraphTrack(), x_LoadSettings(), x_OnJobCompleted(), and x_UpdateData().
The documentation for this class was generated from the following files:
- include/gui/widgets/seq_graphic/graph_track.hpp
- src/gui/widgets/seq_graphic/graph_track.cpp
