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CGuiObjectInfoSeq_feat Class Reference

Search Toolkit Book for CGuiObjectInfoSeq_feat

#include <gui/objutils/gui_object_info_seq_feat.hpp>

+ Inheritance diagram for CGuiObjectInfoSeq_feat:
+ Collaboration diagram for CGuiObjectInfoSeq_feat:

Classes

struct  SFeatSeg
 Data structure for holding a feature segment. More...
 

Public Types

using TSeqFeatMapInfoPair = std::pair< CConstRef< objects::CSeq_feat >, CSeqUtils::TMappingInfo >
 
using TSeqFeatVector = vector< TSeqFeatMapInfoPair >
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

virtual string GetType () const
 
virtual string GetSubtype () const
 
virtual string GetLabel () const
 
virtual void GetToolTip (ITooltipFormatter &tooltip, string &t_title, TSeqPos at_p=(TSeqPos) -1, bool *isGeneratedBySvc=NULL) const
 Get tooltip. More...
 
virtual void GetLinks (ITooltipFormatter &links, bool no_ncbi_base) const
 Get a set of links. More...
 
virtual string GetIcon () const
 
virtual string GetViewCategory () const
 To share default view between different types. More...
 
void SetLocation (const objects::CSeq_loc &loc)
 
void SetTaxId (int tax_id)
 
void SetMappingInfo (const CSeqUtils::TMappingInfo &mapping_info)
 
void SetMappedFeat (const objects::CMappedFeat &mapped_feat)
 
void SetIsProductFeat (bool is_product_feat=true)
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from IGuiObjectInfo
virtual ~IGuiObjectInfo ()
 

Static Public Member Functions

static CGuiObjectInfoSeq_featCreateObject (SConstScopedObject &object, ICreateParams *params)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Protected Types

using TLenPair = pair< string, string >
 
using TLens = vector< TLenPair >
 

Protected Member Functions

string x_CreateLink (const string &label, const string &link) const
 
void x_AddLocationRows (ITooltipFormatter &tooltip) const
 Add feature location-related information. More...
 
void x_AddGroupLocationRows (ITooltipFormatter &tooltip) const
 
void x_GetFeatureToolTip (ITooltipFormatter &tooltip, string &t_title, TSeqPos at_p=(TSeqPos) -1) const
 
void x_GetGroupToolTip (ITooltipFormatter &tooltip, string &t_title, TSeqPos at_p=(TSeqPos) -1) const
 
void x_AddPositionRows (ITooltipFormatter &tooltip, TSeqPos at_p) const
 Add position-specific (current cursor position) information. More...
 
void x_AddExtraInfo (ITooltipFormatter &tooltip, TSeqPos at_p) const
 
void x_GetLocLengthRow (const objects::CSeq_loc &loc, const objects::CSeq_feat &feat, TLens &lens, const string &len_suffix) const
 
void x_GetProductLengthRow (const objects::CSeq_feat &feat, TLens &lens) const
 
CConstRef< objects::CSeq_loc > x_GetFeatLocation (const objects::CSeq_feat &feat, const objects::CBioseq_Handle &handle) const
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Protected Attributes

CConstRef< objects::CSeq_feat > m_Feat
 
CRef< objects::CScope > m_Scope
 
CConstRef< objects::CSeq_loc > m_Location
 Mapped location in top sequence coordinate (can be set externally). More...
 
int m_TaxId
 
CSeqUtils::TMappingInfo m_MappingInfo
 
TSeqFeatVector m_FeaturesGroup
 
objects::CMappedFeat m_MappedFeat
 
bool m_IsProductFeat = false
 Flag to indicate if the feature is a feature projected from CDS product. More...
 

Private Member Functions

SFeatSeg x_GetHitSeg (TSeqPos pos) const
 
TSignedSeqPos x_ToFeature (TSeqPos pos) const
 
TSignedSeqPos x_ToProduct (TSeqPos pos) const
 
TSeqPos x_GetProtOffset () const
 
void x_GetSplicedSeqTitle (const SFeatSeg &seg, TSeqPos at_p, ITooltipFormatter &tooltip) const
 
void x_GetProductSequence (const SFeatSeg &seg, TSeqPos at_p, ITooltipFormatter &tooltip) const
 
string x_GetProductLabel () const
 
string x_GetAccession () const
 

Additional Inherited Members

- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 

Detailed Description

Definition at line 49 of file gui_object_info_seq_feat.hpp.


The documentation for this class was generated from the following files:
Modified on Mon Apr 22 04:03:36 2024 by modify_doxy.py rev. 669887