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Represents ASN.1 type HGVS-Coordinate defined in file objcoords.asn

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CHGVS_Coordinate –. More...

#include <objects/coords/HGVS_Coordinate.hpp>

+ Inheritance diagram for CHGVS_Coordinate:
+ Collaboration diagram for CHGVS_Coordinate:

Public Member Functions

 CHGVS_Coordinate (void)
 
 ~CHGVS_Coordinate (void)
 
- Public Member Functions inherited from CHGVS_Coordinate_Base
 CHGVS_Coordinate_Base (void)
 
virtual ~CHGVS_Coordinate_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetMarker_pos (void) const
 actual marker position this is supplied because this is the position of the marker in the main sequence's coordinate space; this is different than the mapped coordinate space. More...
 
bool CanGetMarker_pos (void) const
 Check if it is safe to call GetMarker_pos method. More...
 
void ResetMarker_pos (void)
 Reset Marker_pos data member. More...
 
TMarker_pos GetMarker_pos (void) const
 Get the Marker_pos member data. More...
 
void SetMarker_pos (TMarker_pos value)
 Assign a value to Marker_pos data member. More...
 
TMarker_posSetMarker_pos (void)
 Assign a value to Marker_pos data member. More...
 
bool IsSetTitle (void) const
 pretty-printed name for the object in general, this should be the "best" seq-id for the product of a feature represented at a position Check if a value has been assigned to Title data member. More...
 
bool CanGetTitle (void) const
 Check if it is safe to call GetTitle method. More...
 
void ResetTitle (void)
 Reset Title data member. More...
 
const TTitleGetTitle (void) const
 Get the Title member data. More...
 
void SetTitle (const TTitle &value)
 Assign a value to Title data member. More...
 
void SetTitle (TTitle &&value)
 
TTitleSetTitle (void)
 Assign a value to Title data member. More...
 
bool IsSetObject_id (void) const
 the fingerprint of the object in question this is a complex reversible hash Check if a value has been assigned to Object_id data member. More...
 
bool CanGetObject_id (void) const
 Check if it is safe to call GetObject_id method. More...
 
void ResetObject_id (void)
 Reset Object_id data member. More...
 
const TObject_idGetObject_id (void) const
 Get the Object_id member data. More...
 
void SetObject_id (const TObject_id &value)
 Assign a value to Object_id data member. More...
 
void SetObject_id (TObject_id &&value)
 
TObject_idSetObject_id (void)
 Assign a value to Object_id data member. More...
 
bool IsSetPos_mapped (void) const
 the mapped position in the object's coordinate space it's not valid for DNA coordinate in UTR and intergenic region, while hgvs-position can be meaningful, that is why OPTIONAL. More...
 
bool CanGetPos_mapped (void) const
 Check if it is safe to call GetPos_mapped method. More...
 
void ResetPos_mapped (void)
 Reset Pos_mapped data member. More...
 
TPos_mapped GetPos_mapped (void) const
 Get the Pos_mapped member data. More...
 
void SetPos_mapped (TPos_mapped value)
 Assign a value to Pos_mapped data member. More...
 
TPos_mappedSetPos_mapped (void)
 Assign a value to Pos_mapped data member. More...
 
bool IsSetHgvs_position (void) const
 a label for this position this shall always be in HGVS nomenclature Check if a value has been assigned to Hgvs_position data member. More...
 
bool CanGetHgvs_position (void) const
 Check if it is safe to call GetHgvs_position method. More...
 
void ResetHgvs_position (void)
 Reset Hgvs_position data member. More...
 
const THgvs_positionGetHgvs_position (void) const
 Get the Hgvs_position member data. More...
 
void SetHgvs_position (const THgvs_position &value)
 Assign a value to Hgvs_position data member. More...
 
void SetHgvs_position (THgvs_position &&value)
 
THgvs_positionSetHgvs_position (void)
 Assign a value to Hgvs_position data member. More...
 
bool IsSetSequence (void) const
 a sequence for this position Check if a value has been assigned to Sequence data member. More...
 
bool CanGetSequence (void) const
 Check if it is safe to call GetSequence method. More...
 
void ResetSequence (void)
 Reset Sequence data member. More...
 
const TSequenceGetSequence (void) const
 Get the Sequence member data. More...
 
void SetSequence (const TSequence &value)
 Assign a value to Sequence data member. More...
 
void SetSequence (TSequence &&value)
 
TSequenceSetSequence (void)
 Assign a value to Sequence data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CHGVS_Coordinate_Base Tparent
 

Private Member Functions

 CHGVS_Coordinate (const CHGVS_Coordinate &value)
 
CHGVS_Coordinateoperator= (const CHGVS_Coordinate &value)
 

Additional Inherited Members

- Public Types inherited from CHGVS_Coordinate_Base
enum class  E_memberIndex {
  e__allMandatory = 0 , e_marker_pos , e_title , e_object_id ,
  e_pos_mapped , e_hgvs_position , e_sequence
}
 
typedef int TMarker_pos
 
typedef string TTitle
 
typedef string TObject_id
 
typedef int TPos_mapped
 
typedef string THgvs_position
 
typedef string TSequence
 
typedef Tparent::CMemberIndex< E_memberIndex, 7 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CHGVS_Coordinate –.

Definition at line 65 of file HGVS_Coordinate.hpp.


The documentation for this class was generated from the following files:
Modified on Mon Jul 15 05:36:14 2024 by modify_doxy.py rev. 669887