Search Toolkit Book for CHG_Stats
#include <objects/homologene/HG_Stats.hpp>
Inheritance diagram for CHG_Stats:
Collaboration diagram for CHG_Stats:
Public Member Functions | |
| CHG_Stats (void) | |
| ~CHG_Stats (void) | |
| Public Member Functions inherited from CHG_Stats_Base | |
| CHG_Stats_Base (void) | |
| virtual | ~CHG_Stats_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetGi1 (void) const |
| Check if a value has been assigned to Gi1 data member. More... | |
| bool | CanGetGi1 (void) const |
| Check if it is safe to call GetGi1 method. More... | |
| void | ResetGi1 (void) |
| Reset Gi1 data member. More... | |
| TGi1 | GetGi1 (void) const |
| Get the Gi1 member data. More... | |
| void | SetGi1 (TGi1 value) |
| Assign a value to Gi1 data member. More... | |
| TGi1 & | SetGi1 (void) |
| Assign a value to Gi1 data member. More... | |
| bool | IsSetGi2 (void) const |
| Check if a value has been assigned to Gi2 data member. More... | |
| bool | CanGetGi2 (void) const |
| Check if it is safe to call GetGi2 method. More... | |
| void | ResetGi2 (void) |
| Reset Gi2 data member. More... | |
| TGi2 | GetGi2 (void) const |
| Get the Gi2 member data. More... | |
| void | SetGi2 (TGi2 value) |
| Assign a value to Gi2 data member. More... | |
| TGi2 & | SetGi2 (void) |
| Assign a value to Gi2 data member. More... | |
| bool | IsSetNuc_change (void) const |
| Check if a value has been assigned to Nuc_change data member. More... | |
| bool | CanGetNuc_change (void) const |
| Check if it is safe to call GetNuc_change method. More... | |
| void | ResetNuc_change (void) |
| Reset Nuc_change data member. More... | |
| TNuc_change | GetNuc_change (void) const |
| Get the Nuc_change member data. More... | |
| void | SetNuc_change (TNuc_change value) |
| Assign a value to Nuc_change data member. More... | |
| TNuc_change & | SetNuc_change (void) |
| Assign a value to Nuc_change data member. More... | |
| bool | IsSetNuc_change_jc (void) const |
| Check if a value has been assigned to Nuc_change_jc data member. More... | |
| bool | CanGetNuc_change_jc (void) const |
| Check if it is safe to call GetNuc_change_jc method. More... | |
| void | ResetNuc_change_jc (void) |
| Reset Nuc_change_jc data member. More... | |
| TNuc_change_jc | GetNuc_change_jc (void) const |
| Get the Nuc_change_jc member data. More... | |
| void | SetNuc_change_jc (TNuc_change_jc value) |
| Assign a value to Nuc_change_jc data member. More... | |
| TNuc_change_jc & | SetNuc_change_jc (void) |
| Assign a value to Nuc_change_jc data member. More... | |
| bool | IsSetProt_change (void) const |
| Check if a value has been assigned to Prot_change data member. More... | |
| bool | CanGetProt_change (void) const |
| Check if it is safe to call GetProt_change method. More... | |
| void | ResetProt_change (void) |
| Reset Prot_change data member. More... | |
| TProt_change | GetProt_change (void) const |
| Get the Prot_change member data. More... | |
| void | SetProt_change (TProt_change value) |
| Assign a value to Prot_change data member. More... | |
| TProt_change & | SetProt_change (void) |
| Assign a value to Prot_change data member. More... | |
| bool | IsSetKa (void) const |
| Check if a value has been assigned to Ka data member. More... | |
| bool | CanGetKa (void) const |
| Check if it is safe to call GetKa method. More... | |
| void | ResetKa (void) |
| Reset Ka data member. More... | |
| TKa | GetKa (void) const |
| Get the Ka member data. More... | |
| void | SetKa (TKa value) |
| Assign a value to Ka data member. More... | |
| TKa & | SetKa (void) |
| Assign a value to Ka data member. More... | |
| bool | IsSetKs (void) const |
| Check if a value has been assigned to Ks data member. More... | |
| bool | CanGetKs (void) const |
| Check if it is safe to call GetKs method. More... | |
| void | ResetKs (void) |
| Reset Ks data member. More... | |
| TKs | GetKs (void) const |
| Get the Ks member data. More... | |
| void | SetKs (TKs value) |
| Assign a value to Ks data member. More... | |
| TKs & | SetKs (void) |
| Assign a value to Ks data member. More... | |
| bool | IsSetKnr (void) const |
| Check if a value has been assigned to Knr data member. More... | |
| bool | CanGetKnr (void) const |
| Check if it is safe to call GetKnr method. More... | |
| void | ResetKnr (void) |
| Reset Knr data member. More... | |
| TKnr | GetKnr (void) const |
| Get the Knr member data. More... | |
| void | SetKnr (TKnr value) |
| Assign a value to Knr data member. More... | |
| TKnr & | SetKnr (void) |
| Assign a value to Knr data member. More... | |
| bool | IsSetKnc (void) const |
| Check if a value has been assigned to Knc data member. More... | |
| bool | CanGetKnc (void) const |
| Check if it is safe to call GetKnc method. More... | |
| void | ResetKnc (void) |
| Reset Knc data member. More... | |
| TKnc | GetKnc (void) const |
| Get the Knc member data. More... | |
| void | SetKnc (TKnc value) |
| Assign a value to Knc data member. More... | |
| TKnc & | SetKnc (void) |
| Assign a value to Knc data member. More... | |
| bool | IsSetRecip_best (void) const |
| Check if a value has been assigned to Recip_best data member. More... | |
| bool | CanGetRecip_best (void) const |
| Check if it is safe to call GetRecip_best method. More... | |
| void | ResetRecip_best (void) |
| Reset Recip_best data member. More... | |
| TRecip_best | GetRecip_best (void) const |
| Get the Recip_best member data. More... | |
| void | SetRecip_best (TRecip_best value) |
| Assign a value to Recip_best data member. More... | |
| TRecip_best & | SetRecip_best (void) |
| Assign a value to Recip_best data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CHG_Stats_Base | Tparent |
Private Member Functions | |
| CHG_Stats (const CHG_Stats &value) | |
| CHG_Stats & | operator= (const CHG_Stats &value) |
Additional Inherited Members | |
| Public Types inherited from CHG_Stats_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_gi1 , e_gi2 , e_nuc_change , e_nuc_change_jc , e_prot_change , e_ka , e_ks , e_knr , e_knc , e_recip_best } |
| typedef int | TGi1 |
| typedef int | TGi2 |
| typedef double | TNuc_change |
| typedef double | TNuc_change_jc |
| typedef double | TProt_change |
| typedef double | TKa |
| typedef double | TKs |
| typedef double | TKnr |
| typedef double | TKnc |
| typedef bool | TRecip_best |
| typedef Tparent::CMemberIndex< E_memberIndex, 11 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CHG_Stats –.
Definition at line 65 of file HG_Stats.hpp.
The documentation for this class was generated from the following files:
- include/objects/homologene/HG_Stats.hpp
- src/objects/homologene/HG_Stats.cpp
