NCBI C++ ToolKit
CHit Member List

This is the complete list of members for CHit, including all inherited members.

AddReference(void) constCObjectinline
AddUpSubHits()CHit
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)CSerialObjectvirtual
CanBeDeleted(void) const THROWS_NONECObjectinline
CanGetAccession(void) constCHit_Baseinline
CanGetDef(void) constCHit_Baseinline
CanGetDescription(void) constCHit_Baseinline
CanGetHsps(void) constCHit_Baseinline
CanGetHsps(void) constCHit_Base
CanGetId(void) constCHit_Baseinline
CanGetLen(void) constCHit_Baseinline
CanGetLen(void) constCHit_Base
CanGetNum(void) constCHit_Baseinline
CanGetNum(void) constCHit_Base
CDebugDumpable(void)CDebugDumpableinline
CheckReferenceOverflow(TCount count) constCObjectprivate
CHit(int seq1_index, int seq2_index)CHitinline
CHit(int seq1_index, int seq2_index, BlastHSP *hsp)CHitinline
CHit(int seq1_index, int seq2_index, int score, const objects::CDense_seg &denseg)CHit
CHit(int seq1_index, int seq2_index, int score, const objects::CDense_diag &dendiag)CHit
CHit(int seq1_index, int seq2_index, TRange seq_range1, TRange seq_range2, int score, CEditScript edit_script)CHitinline
CHit(void)CHitinline
CHit(const CHit &value)CHitprivate
CHit(void)CHit
CHit(const CHit &value)CHitprivate
CHit_Base(void)CHit_Base
CHit_Base(const CHit_Base &)CHit_Baseprivate
CHit_Base(void)CHit_Base
CHit_Base(const CHit_Base &)CHit_Baseprivate
Clone()CHit
CObject(void)CObject
CObject(const CObject &src)CObject
CSerialObject(void)CSerialObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCSerialObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DECLARE_INTERNAL_TYPE_INFO()CHit_Base
DECLARE_INTERNAL_TYPE_INFO()CHit_Base
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
E_memberIndex enum nameCHit_Base
E_memberIndex enum nameCHit_Base
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) constCSerialObjectvirtual
GetAccession(void) constCHit_Baseinline
GetAllocFillMode(void)CObjectstatic
GetDef(void) constCHit_Baseinline
GetDescription(void) constCHit_Baseinline
GetEditScript()CHitinline
GetHsps(void) constCHit_Baseinline
GetHsps(void) constCHit_Base
GetId(void) constCHit_Baseinline
GetLen(void) constCHit_Baseinline
GetLen(void) constCHit_Base
GetNamespaceName(void) constCSerialObject
GetNamespacePrefix(void) constCSerialObject
GetNum(void) constCHit_Baseinline
GetNum(void) constCHit_Base
GetRangeFromSeq1(TRange seq_range1, TRange &new_seq_range1, TRange &seq_range2, TRange &traceback_range)CHit
GetRangeFromSeq2(TRange seq_range2, TRange &seq_range1, TRange &new_seq_range2, TRange &traceback_range)CHit
GetSubHit()CHitinline
GetThisTypeInfo(void) const =0CSerialObjectpure virtual
HasNamespaceName(void) constCSerialObject
HasNamespacePrefix(void) constCSerialObject
HasSubHits()CHitinline
InitCounter(void)CObjectinlineprivate
InsertSubHit(CHit *hit)CHitinline
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
IsSetAccession(void) constCHit_Baseinline
IsSetDef(void) constCHit_Baseinline
IsSetDescription(void) constCHit_Baseinline
IsSetHsps(void) constCHit_Baseinline
IsSetHsps(void) constCHit_Base
IsSetId(void) constCHit_Baseinline
IsSetLen(void) constCHit_Baseinline
IsSetLen(void) constCHit_Base
IsSetNum(void) constCHit_Baseinline
IsSetNum(void) constCHit_Base
kMinHitSizeCHitstatic
m_AccessionCHit_Baseprivate
m_CounterCObjectmutableprivate
m_DefCHit_Baseprivate
m_DescriptionCHit_Baseprivate
m_EditScriptCHitprivate
m_HspsCHit_Baseprivate
m_IdCHit_Baseprivate
m_LenCHit_Baseprivate
m_NumCHit_Baseprivate
m_ScoreCHit
m_SeqIndex1CHit
m_SeqIndex2CHit
m_SeqRange1CHit
m_SeqRange2CHit
m_set_StateCHit_Baseprivate
m_SubHitCHitprivate
ms_UnassignedByteCSerialObjectstatic
ms_UnassignedStrCSerialObjectstatic
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CHit &value)CHitprivate
operator=(const CHit &value)CHitprivate
CHit_Base::CSerialObject::operator=(const CObject &src) THROWS_NONECObjectinline
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
Reset(void)CHit_Basevirtual
Reset(void)CHit_Basevirtual
ResetAccession(void)CHit_Base
ResetDef(void)CHit_Base
ResetDescription(void)CHit_Base
ResetHsps(void)CHit_Base
ResetHsps(void)CHit_Base
ResetId(void)CHit_Base
ResetLen(void)CHit_Baseinline
ResetLen(void)CHit_Base
ResetNum(void)CHit_Baseinline
ResetNum(void)CHit_Base
ResolveSubHitConflicts(CSequence &seq1, int **seq2_pssm, CNWAligner::TScore gap_open, CNWAligner::TScore gap_extend)CHit
SetAccession(const TAccession &value)CHit_Baseinline
SetAccession(TAccession &&value)CHit_Baseinline
SetAccession(void)CHit_Baseinline
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetDef(const TDef &value)CHit_Baseinline
SetDef(TDef &&value)CHit_Baseinline
SetDef(void)CHit_Baseinline
SetDescription(void)CHit_Baseinline
SetHsps(void)CHit_Baseinline
SetHsps(void)CHit_Base
SetId(const TId &value)CHit_Baseinline
SetId(TId &&value)CHit_Baseinline
SetId(void)CHit_Baseinline
SetLen(TLen value)CHit_Baseinline
SetLen(void)CHit_Baseinline
SetLen(TLen value)CHit_Base
SetLen(void)CHit_Base
SetNum(TNum value)CHit_Baseinline
SetNum(void)CHit_Baseinline
SetNum(TNum value)CHit_Base
SetNum(void)CHit_Base
SetVerifyDataGlobal(ESerialVerifyData verify)CSerialObjectstatic
SetVerifyDataThread(ESerialVerifyData verify)CSerialObjectstatic
sm_DumpEnabledCDebugDumpableprivatestatic
TAccession typedefCHit_Base
TCount typedefCObject
TCounter typedefCObject
TDef typedefCHit_Base
TDescription typedefCHit_Base
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
ThrowUnassigned(TMemberIndex index) constCSerialObject
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) constCSerialObject
THsps typedefCHit_Base
THsps typedefCHit_Base
TId typedefCHit_Base
TLen typedefCHit_Base
TLen typedefCHit_Base
TLockerType typedefCObject
TmemberIndex typedefCHit_Base
TmemberIndex typedefCHit_Base
TNum typedefCHit_Base
TNum typedefCHit_Base
Tparent typedefCHitprivate
Tparent typedefCHitprivate
TSubHit typedefCHit
UnassignedByte(void)CSerialObjectinlinestatic
UnassignedString(void)CSerialObjectinlinestatic
UnassignedStringUTF8(void)CSerialObjectinlinestatic
VerifyHit()CHit
x_GetVerifyData(void)CSerialObjectprivatestatic
~CDebugDumpable(void)CDebugDumpablevirtual
~CHit()CHitinline
~CHit(void)CHit
~CHit(void)CHit
~CHit_Base(void)CHit_Basevirtual
~CHit_Base(void)CHit_Basevirtual
~CObject(void)CObjectvirtual
~CSerialObject(void)CSerialObjectvirtual
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Modified on Wed Apr 17 13:08:49 2024 by modify_doxy.py rev. 669887