NCBI C++ ToolKit
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Search Toolkit Book for CID2S_Chunk_Content
CID2S_Chunk_Content –. More...
#include <objects/seqsplit/ID2S_Chunk_Content.hpp>
Public Member Functions | |
CID2S_Chunk_Content (void) | |
~CID2S_Chunk_Content (void) | |
Public Member Functions inherited from CID2S_Chunk_Content_Base | |
CID2S_Chunk_Content_Base (void) | |
virtual | ~CID2S_Chunk_Content_Base (void) |
DECLARE_INTERNAL_TYPE_INFO () | |
virtual void | Reset (void) |
Reset the whole object. More... | |
virtual void | ResetSelection (void) |
Reset the selection (set it to e_not_set). More... | |
E_Choice | Which (void) const |
Which variant is currently selected. More... | |
void | CheckSelected (E_Choice index) const |
Verify selection, throw exception if it differs from the expected. More... | |
void | ThrowInvalidSelection (E_Choice index) const |
Throw 'InvalidSelection' exception. More... | |
void | Select (E_Choice index, EResetVariant reset=eDoResetVariant) |
Select the requested variant if needed. More... | |
void | Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool) |
Select the requested variant if needed, allocating CObject variants from memory pool. More... | |
bool | IsSeq_descr (void) const |
Check if variant Seq_descr is selected. More... | |
const TSeq_descr & | GetSeq_descr (void) const |
Get the variant data. More... | |
TSeq_descr & | SetSeq_descr (void) |
Select the variant. More... | |
void | SetSeq_descr (TSeq_descr &value) |
Select the variant and set its data. More... | |
bool | IsSeq_annot (void) const |
Check if variant Seq_annot is selected. More... | |
const TSeq_annot & | GetSeq_annot (void) const |
Get the variant data. More... | |
TSeq_annot & | SetSeq_annot (void) |
Select the variant. More... | |
void | SetSeq_annot (TSeq_annot &value) |
Select the variant and set its data. More... | |
bool | IsSeq_assembly (void) const |
Check if variant Seq_assembly is selected. More... | |
const TSeq_assembly & | GetSeq_assembly (void) const |
Get the variant data. More... | |
TSeq_assembly & | SetSeq_assembly (void) |
Select the variant. More... | |
void | SetSeq_assembly (TSeq_assembly &value) |
Select the variant and set its data. More... | |
bool | IsSeq_map (void) const |
Check if variant Seq_map is selected. More... | |
const TSeq_map & | GetSeq_map (void) const |
Get the variant data. More... | |
TSeq_map & | SetSeq_map (void) |
Select the variant. More... | |
void | SetSeq_map (TSeq_map &value) |
Select the variant and set its data. More... | |
bool | IsSeq_data (void) const |
Check if variant Seq_data is selected. More... | |
const TSeq_data & | GetSeq_data (void) const |
Get the variant data. More... | |
TSeq_data & | SetSeq_data (void) |
Select the variant. More... | |
void | SetSeq_data (TSeq_data &value) |
Select the variant and set its data. More... | |
bool | IsSeq_annot_place (void) const |
Check if variant Seq_annot_place is selected. More... | |
const TSeq_annot_place & | GetSeq_annot_place (void) const |
Get the variant data. More... | |
TSeq_annot_place & | SetSeq_annot_place (void) |
Select the variant. More... | |
void | SetSeq_annot_place (TSeq_annot_place &value) |
Select the variant and set its data. More... | |
bool | IsBioseq_place (void) const |
Check if variant Bioseq_place is selected. More... | |
const TBioseq_place & | GetBioseq_place (void) const |
Get the variant data. More... | |
TBioseq_place & | SetBioseq_place (void) |
Select the variant. More... | |
bool | IsFeat_ids (void) const |
Check if variant Feat_ids is selected. More... | |
const TFeat_ids & | GetFeat_ids (void) const |
Get the variant data. More... | |
TFeat_ids & | SetFeat_ids (void) |
Select the variant. More... | |
Public Member Functions inherited from CSerialObject | |
CSerialObject (void) | |
virtual | ~CSerialObject (void) |
virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
Set object to copy of another one. More... | |
virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
Check if both objects contain the same values. More... | |
virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
Define method for dumping debug information. More... | |
void | ThrowUnassigned (TMemberIndex index) const |
void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
bool | HasNamespaceName (void) const |
Check if object data type has namespace name. More... | |
const string & | GetNamespaceName (void) const |
Get namespace name. More... | |
bool | HasNamespacePrefix (void) const |
Check if data type has namespace prefix. More... | |
const string & | GetNamespacePrefix (void) const |
Get namespace prefix. More... | |
Public Member Functions inherited from CObject | |
CObject (void) | |
Constructor. More... | |
CObject (const CObject &src) | |
Copy constructor. More... | |
virtual | ~CObject (void) |
Destructor. More... | |
CObject & | operator= (const CObject &src) THROWS_NONE |
Assignment operator. More... | |
bool | CanBeDeleted (void) const THROWS_NONE |
Check if object can be deleted. More... | |
bool | IsAllocatedInPool (void) const THROWS_NONE |
Check if object is allocated in memory pool (not system heap) More... | |
bool | Referenced (void) const THROWS_NONE |
Check if object is referenced. More... | |
bool | ReferencedOnlyOnce (void) const THROWS_NONE |
Check if object is referenced only once. More... | |
void | AddReference (void) const |
Add reference to object. More... | |
void | RemoveReference (void) const |
Remove reference to object. More... | |
void | ReleaseReference (void) const |
Remove reference without deleting object. More... | |
virtual void | DoNotDeleteThisObject (void) |
Mark this object as not allocated in heap – do not delete this object. More... | |
virtual void | DoDeleteThisObject (void) |
Mark this object as allocated in heap – object can be deleted. More... | |
void * | operator new (size_t size) |
Define new operator for memory allocation. More... | |
void * | operator new[] (size_t size) |
Define new[] operator for 'array' memory allocation. More... | |
void | operator delete (void *ptr) |
Define delete operator for memory deallocation. More... | |
void | operator delete[] (void *ptr) |
Define delete[] operator for memory deallocation. More... | |
void * | operator new (size_t size, void *place) |
Define new operator. More... | |
void | operator delete (void *ptr, void *place) |
Define delete operator. More... | |
void * | operator new (size_t size, CObjectMemoryPool *place) |
Define new operator using memory pool. More... | |
void | operator delete (void *ptr, CObjectMemoryPool *place) |
Define delete operator. More... | |
Public Member Functions inherited from CDebugDumpable | |
CDebugDumpable (void) | |
virtual | ~CDebugDumpable (void) |
void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
void | DumpToConsole (void) const |
Private Types | |
typedef CID2S_Chunk_Content_Base | Tparent |
Private Member Functions | |
CID2S_Chunk_Content (const CID2S_Chunk_Content &value) | |
CID2S_Chunk_Content & | operator= (const CID2S_Chunk_Content &value) |
Additional Inherited Members | |
Public Types inherited from CID2S_Chunk_Content_Base | |
enum | E_Choice { e_not_set = 0 , e_Seq_descr , e_Seq_annot , e_Seq_assembly , e_Seq_map , e_Seq_data , e_Seq_annot_place , e_Bioseq_place , e_Feat_ids } |
Choice variants. More... | |
enum | E_ChoiceStopper { e_MaxChoice = 9 } |
Maximum+1 value of the choice variant enumerator. More... | |
typedef CID2S_Seq_descr_Info | TSeq_descr |
typedef CID2S_Seq_annot_Info | TSeq_annot |
typedef CID2S_Seq_assembly_Info | TSeq_assembly |
typedef CID2S_Seq_map_Info | TSeq_map |
typedef CID2S_Seq_data_Info | TSeq_data |
typedef CID2S_Seq_annot_place_Info | TSeq_annot_place |
typedef list< CRef< CID2S_Bioseq_place_Info > > | TBioseq_place |
typedef list< CRef< CID2S_Seq_feat_Ids_Info > > | TFeat_ids |
Public Types inherited from CObject | |
enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
Control filling of newly allocated memory. More... | |
typedef CObjectCounterLocker | TLockerType |
Default locker type for CRef. More... | |
typedef atomic< Uint8 > | TCounter |
Counter type is CAtomiCounter. More... | |
typedef Uint8 | TCount |
Alias for value type of counter. More... | |
Static Public Member Functions inherited from CID2S_Chunk_Content_Base | |
static string | SelectionName (E_Choice index) |
Retrieve selection name (for diagnostic purposes). More... | |
Static Public Member Functions inherited from CSerialObject | |
static void | SetVerifyDataThread (ESerialVerifyData verify) |
static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
static string | UnassignedString (void) |
static CStringUTF8 | UnassignedStringUTF8 (void) |
static char | UnassignedByte (void) |
Static Public Member Functions inherited from CObject | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
Define method to throw null pointer exception. More... | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
static EAllocFillMode | GetAllocFillMode (void) |
static void | SetAllocFillMode (EAllocFillMode mode) |
static void | SetAllocFillMode (const string &value) |
Set mode from configuration parameter value. More... | |
Static Public Member Functions inherited from CDebugDumpable | |
static void | EnableDebugDump (bool on) |
Static Public Attributes inherited from CSerialObject | |
static const char * | ms_UnassignedStr = "<*unassigned*>" |
static const char | ms_UnassignedByte = char(0xcd) |
Static Public Attributes inherited from CObject | |
static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
Define possible object states. More... | |
static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
Heap signature was found. More... | |
static const TCount | eCounterBitsPlaceMask |
Mask for 'in heap' state flags. More... | |
static const int | eCounterStep = 1 << 2 |
Skip over the "in heap" bits. More... | |
static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
static const TCount | eCounterStateMask |
Valid object, and object in heap. More... | |
Protected Member Functions inherited from CObject | |
virtual void | DeleteThis (void) |
Virtual method "deleting" this object. More... | |
Definition at line 65 of file ID2S_Chunk_Content.hpp.