NCBI C++ ToolKit
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Represents ASN.1 type ID2S-Chunk-Data defined in file seqsplit.asn

Search Toolkit Book for CID2S_Chunk_Data

CID2S_Chunk_Data –. More...

#include <objects/seqsplit/ID2S_Chunk_Data.hpp>

+ Inheritance diagram for CID2S_Chunk_Data:
+ Collaboration diagram for CID2S_Chunk_Data:

Public Member Functions

 CID2S_Chunk_Data (void)
 
 ~CID2S_Chunk_Data (void)
 
- Public Member Functions inherited from CID2S_Chunk_Data_Base
 CID2S_Chunk_Data_Base (void)
 
virtual ~CID2S_Chunk_Data_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetId (void) const
 Check if a value has been assigned to Id data member. More...
 
bool CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void ResetId (void)
 Reset Id data member. More...
 
const TIdGetId (void) const
 Get the Id member data. More...
 
void SetId (TId &value)
 Assign a value to Id data member. More...
 
TIdSetId (void)
 Assign a value to Id data member. More...
 
bool IsSetDescr (void) const
 Seq-descr, for Bioseq and Bioseq-set Check if a value has been assigned to Descr data member. More...
 
bool CanGetDescr (void) const
 Check if it is safe to call GetDescr method. More...
 
void ResetDescr (void)
 Reset Descr data member. More...
 
const TDescrGetDescr (void) const
 Get the Descr member data. More...
 
void SetDescr (TDescr &value)
 Assign a value to Descr data member. More...
 
TDescrSetDescr (void)
 Assign a value to Descr data member. More...
 
bool IsSetAnnots (void) const
 Seq-annot, for Bioseq and Bioseq-set Check if a value has been assigned to Annots data member. More...
 
bool CanGetAnnots (void) const
 Check if it is safe to call GetAnnots method. More...
 
void ResetAnnots (void)
 Reset Annots data member. More...
 
const TAnnotsGetAnnots (void) const
 Get the Annots member data. More...
 
TAnnotsSetAnnots (void)
 Assign a value to Annots data member. More...
 
bool IsSetAssembly (void) const
 assembly history Seq-align, for Bioseq Check if a value has been assigned to Assembly data member. More...
 
bool CanGetAssembly (void) const
 Check if it is safe to call GetAssembly method. More...
 
void ResetAssembly (void)
 Reset Assembly data member. More...
 
const TAssemblyGetAssembly (void) const
 Get the Assembly member data. More...
 
TAssemblySetAssembly (void)
 Assign a value to Assembly data member. More...
 
bool IsSetSeq_map (void) const
 sequence map, for Bioseq Check if a value has been assigned to Seq_map data member. More...
 
bool CanGetSeq_map (void) const
 Check if it is safe to call GetSeq_map method. More...
 
void ResetSeq_map (void)
 Reset Seq_map data member. More...
 
const TSeq_mapGetSeq_map (void) const
 Get the Seq_map member data. More...
 
TSeq_mapSetSeq_map (void)
 Assign a value to Seq_map data member. More...
 
bool IsSetSeq_data (void) const
 sequence data, for Bioseq Check if a value has been assigned to Seq_data data member. More...
 
bool CanGetSeq_data (void) const
 Check if it is safe to call GetSeq_data method. More...
 
void ResetSeq_data (void)
 Reset Seq_data data member. More...
 
const TSeq_dataGetSeq_data (void) const
 Get the Seq_data member data. More...
 
TSeq_dataSetSeq_data (void)
 Assign a value to Seq_data data member. More...
 
bool IsSetBioseqs (void) const
 Bioseq, for Bioseq-set Check if a value has been assigned to Bioseqs data member. More...
 
bool CanGetBioseqs (void) const
 Check if it is safe to call GetBioseqs method. More...
 
void ResetBioseqs (void)
 Reset Bioseqs data member. More...
 
const TBioseqsGetBioseqs (void) const
 Get the Bioseqs member data. More...
 
TBioseqsSetBioseqs (void)
 Assign a value to Bioseqs data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CID2S_Chunk_Data_Base Tparent
 

Private Member Functions

 CID2S_Chunk_Data (const CID2S_Chunk_Data &value)
 
CID2S_Chunk_Dataoperator= (const CID2S_Chunk_Data &value)
 

Additional Inherited Members

- Public Types inherited from CID2S_Chunk_Data_Base
enum class  E_memberIndex {
  e__allMandatory = 0 , e_id , e_descr , e_annots ,
  e_assembly , e_seq_map , e_seq_data , e_bioseqs
}
 
typedef C_Id TId
 
typedef CSeq_descr TDescr
 
typedef list< CRef< CSeq_annot > > TAnnots
 
typedef list< CRef< CSeq_align > > TAssembly
 
typedef list< CRef< CID2S_Sequence_Piece > > TSeq_map
 
typedef list< CRef< CID2S_Sequence_Piece > > TSeq_data
 
typedef list< CRef< CBioseq > > TBioseqs
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CID2S_Chunk_Data –.

Definition at line 65 of file ID2S_Chunk_Data.hpp.


The documentation for this class was generated from the following files:
Modified on Sun Mar 03 03:11:14 2024 by modify_doxy.py rev. 669887