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Search Toolkit Book for CID2S_Seq_map_Info

CID2S_Seq_map_Info –. More...

#include <objects/seqsplit/ID2S_Seq_map_Info.hpp>

+ Inheritance diagram for CID2S_Seq_map_Info:
+ Collaboration diagram for CID2S_Seq_map_Info:

Public Member Functions

 CID2S_Seq_map_Info (void)
 
- Public Member Functions inherited from CID2S_Seq_map_Info_Base
 CID2S_Seq_map_Info_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
const CID2S_Seq_locGet (void) const
 
CID2S_Seq_locSet (void)
 
- Public Member Functions inherited from CID2S_Seq_loc
 CID2S_Seq_loc (void)
 
 ~CID2S_Seq_loc (void)
 
- Public Member Functions inherited from CID2S_Seq_loc_Base
 CID2S_Seq_loc_Base (void)
 
virtual ~CID2S_Seq_loc_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
virtual void Reset (void)
 Reset the whole object. More...
 
virtual void ResetSelection (void)
 Reset the selection (set it to e_not_set). More...
 
E_Choice Which (void) const
 Which variant is currently selected. More...
 
void CheckSelected (E_Choice index) const
 Verify selection, throw exception if it differs from the expected. More...
 
void ThrowInvalidSelection (E_Choice index) const
 Throw 'InvalidSelection' exception. More...
 
void Select (E_Choice index, EResetVariant reset=eDoResetVariant)
 Select the requested variant if needed. More...
 
void Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
 Select the requested variant if needed, allocating CObject variants from memory pool. More...
 
bool IsWhole_gi (void) const
 Check if variant Whole_gi is selected. More...
 
TWhole_gi GetWhole_gi (void) const
 Get the variant data. More...
 
TWhole_giSetWhole_gi (void)
 Select the variant. More...
 
void SetWhole_gi (TWhole_gi value)
 Select the variant and set its data. More...
 
bool IsWhole_seq_id (void) const
 Check if variant Whole_seq_id is selected. More...
 
const TWhole_seq_idGetWhole_seq_id (void) const
 Get the variant data. More...
 
TWhole_seq_idSetWhole_seq_id (void)
 Select the variant. More...
 
void SetWhole_seq_id (TWhole_seq_id &value)
 Select the variant and set its data. More...
 
bool IsWhole_gi_range (void) const
 Check if variant Whole_gi_range is selected. More...
 
const TWhole_gi_rangeGetWhole_gi_range (void) const
 Get the variant data. More...
 
TWhole_gi_rangeSetWhole_gi_range (void)
 Select the variant. More...
 
void SetWhole_gi_range (TWhole_gi_range &value)
 Select the variant and set its data. More...
 
bool IsGi_interval (void) const
 Check if variant Gi_interval is selected. More...
 
const TGi_intervalGetGi_interval (void) const
 Get the variant data. More...
 
TGi_intervalSetGi_interval (void)
 Select the variant. More...
 
void SetGi_interval (TGi_interval &value)
 Select the variant and set its data. More...
 
bool IsSeq_id_interval (void) const
 Check if variant Seq_id_interval is selected. More...
 
const TSeq_id_intervalGetSeq_id_interval (void) const
 Get the variant data. More...
 
TSeq_id_intervalSetSeq_id_interval (void)
 Select the variant. More...
 
void SetSeq_id_interval (TSeq_id_interval &value)
 Select the variant and set its data. More...
 
bool IsGi_ints (void) const
 Check if variant Gi_ints is selected. More...
 
const TGi_intsGetGi_ints (void) const
 Get the variant data. More...
 
TGi_intsSetGi_ints (void)
 Select the variant. More...
 
void SetGi_ints (TGi_ints &value)
 Select the variant and set its data. More...
 
bool IsSeq_id_ints (void) const
 Check if variant Seq_id_ints is selected. More...
 
const TSeq_id_intsGetSeq_id_ints (void) const
 Get the variant data. More...
 
TSeq_id_intsSetSeq_id_ints (void)
 Select the variant. More...
 
void SetSeq_id_ints (TSeq_id_ints &value)
 Select the variant and set its data. More...
 
bool IsLoc_set (void) const
 Check if variant Loc_set is selected. More...
 
const TLoc_setGetLoc_set (void) const
 Get the variant data. More...
 
TLoc_setSetLoc_set (void)
 Select the variant. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CID2S_Seq_map_Info_Base Tparent
 

Additional Inherited Members

- Public Types inherited from CID2S_Seq_loc_Base
enum  E_Choice {
  e_not_set = 0 , e_Whole_gi , e_Whole_seq_id , e_Whole_gi_range ,
  e_Gi_interval , e_Seq_id_interval , e_Gi_ints , e_Seq_id_ints ,
  e_Loc_set
}
 Choice variants. More...
 
enum  E_ChoiceStopper { e_MaxChoice = 9 }
 Maximum+1 value of the choice variant enumerator. More...
 
typedef NCBI_NS_NCBI::TGi TWhole_gi
 
typedef CSeq_id TWhole_seq_id
 
typedef CID2S_Gi_Range TWhole_gi_range
 
typedef CID2S_Gi_Interval TGi_interval
 
typedef CID2S_Seq_id_Interval TSeq_id_interval
 
typedef CID2S_Gi_Ints TGi_ints
 
typedef CID2S_Seq_id_Ints TSeq_id_ints
 
typedef list< CRef< CID2S_Seq_loc > > TLoc_set
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CID2S_Seq_loc_Base
static string SelectionName (E_Choice index)
 Retrieve selection name (for diagnostic purposes). More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CID2S_Seq_map_Info –.

Definition at line 65 of file ID2S_Seq_map_Info.hpp.


The documentation for this class was generated from the following file:
Modified on Fri Sep 20 14:57:59 2024 by modify_doxy.py rev. 669887