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NCBI C++ ToolKit
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This is the complete list of members for CIgBlast, including all inherited members.
| AddReference(void) const | CObject | inline |
| CanBeDeleted(void) const THROWS_NONE | CObject | inline |
| CDebugDumpable(void) | CDebugDumpable | inline |
| CheckReferenceOverflow(TCount count) const | CObject | private |
| CIgBlast(CRef< CBlastQueryVector > query_factory, CRef< CLocalDbAdapter > blastdb, CRef< CBlastOptionsHandle > options, CConstRef< CIgBlastOptions > ig_options, CRef< CScope > scope) | CIgBlast | inline |
| CIgBlast(CRef< CBlastQueryVector > query_factory, CRef< CSearchDatabase > blastdb, CRef< IQueryFactory > subjects, CRef< CBlastOptionsHandle > options, CConstRef< CIgBlastOptions > ig_options, string entrez_query, CRef< CScope > scope) | CIgBlast | inline |
| CIgBlast(const CIgBlast &rhs) | CIgBlast | private |
| CObject(void) | CObject | |
| CObject(const CObject &src) | CObject | |
| DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CObject | virtual |
| DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DeleteThis(void) | CObject | protectedvirtual |
| DoDeleteThisObject(void) | CObject | virtual |
| DoNotDeleteThisObject(void) | CObject | virtual |
| DumpToConsole(void) const | CDebugDumpable | |
| EAllocFillMode enum name | CObject | |
| eAllocFillNone enum value | CObject | |
| eAllocFillPattern enum value | CObject | |
| eAllocFillZero enum value | CObject | |
| eCounterBitsCanBeDeleted | CObject | static |
| eCounterBitsInPlainHeap | CObject | static |
| eCounterBitsPlaceMask | CObject | static |
| eCounterStateMask | CObject | static |
| eCounterStep | CObject | static |
| eCounterValid | CObject | static |
| EnableDebugDump(bool on) | CDebugDumpable | static |
| GetAllocFillMode(void) | CObject | static |
| GetRid() | CIgBlast | inline |
| InitCounter(void) | CObject | inlineprivate |
| InvalidObject(void) const | CObject | private |
| IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
| m_AnnotationInfo | CIgBlast | private |
| m_Counter | CObject | mutableprivate |
| m_EntrezQuery | CIgBlast | private |
| m_IgOptions | CIgBlast | private |
| m_IsLocal | CIgBlast | private |
| m_LocalDb | CIgBlast | private |
| m_NumThreads | CIgBlast | private |
| m_Options | CIgBlast | private |
| m_Query | CIgBlast | private |
| m_RemoteDb | CIgBlast | private |
| m_RID | CIgBlast | private |
| m_Scope | CIgBlast | private |
| m_Subject | CIgBlast | private |
| ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
| ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
| ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
| operator delete(void *ptr) | CObject | |
| operator delete(void *ptr, void *place) | CObject | |
| operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
| operator delete[](void *ptr) | CObject | |
| operator new(size_t size) | CObject | |
| operator new(size_t size, void *place) | CObject | |
| operator new(size_t size, CObjectMemoryPool *place) | CObject | |
| operator new[](size_t size) | CObject | |
| operator=(const CIgBlast &rhs) | CIgBlast | private |
| CObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
| Referenced(void) const THROWS_NONE | CObject | inline |
| ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
| ReleaseReference(void) const | CObject | |
| RemoveLastReference(TCount count) const | CObject | private |
| RemoveReference(void) const | CObject | inline |
| Run() | CIgBlast | |
| s_AppendResults(CRef< CSearchResultSet > &results, int num_aligns, int gene, CRef< CSearchResultSet > &final_results) | CIgBlast | privatestatic |
| s_SortResultsByEvalue(CRef< CSearchResultSet > &results) | CIgBlast | privatestatic |
| SetAllocFillMode(EAllocFillMode mode) | CObject | static |
| SetAllocFillMode(const string &value) | CObject | static |
| SetNumberOfThreads(size_t nthreads) | CIgBlast | inline |
| sm_DumpEnabled | CDebugDumpable | privatestatic |
| TCount typedef | CObject | |
| TCounter typedef | CObject | |
| ThrowNullPointerException(void) | CObject | static |
| ThrowNullPointerException(const type_info &type) | CObject | static |
| TLockerType typedef | CObject | |
| x_AnnotateC(CRef< CSearchResultSet > &results_c, CRef< CSearchResultSet > &results_j, vector< CRef< CIgAnnotation > > &annot) | CIgBlast | private |
| x_AnnotateD(CRef< CSearchResultSet > &results_D, vector< CRef< CIgAnnotation > > &annot) | CIgBlast | private |
| x_AnnotateDJ(CRef< CSearchResultSet > &results_D, CRef< CSearchResultSet > &results_J, vector< CRef< CIgAnnotation > > &annot) | CIgBlast | private |
| x_AnnotateDomain(CRef< CSearchResultSet > &gl_results, CRef< CSearchResultSet > &dm_results, vector< CRef< CIgAnnotation > > &annot) | CIgBlast | private |
| x_AnnotateJ(CRef< CSearchResultSet > &results_J, vector< CRef< CIgAnnotation > > &annot) | CIgBlast | private |
| x_AnnotateV(CRef< CSearchResultSet > &results, vector< CRef< CIgAnnotation > > &annot) | CIgBlast | private |
| x_ConvertResultType(CRef< CSearchResultSet > &results) | CIgBlast | private |
| x_ExtendAlign3end(CRef< CSearchResultSet > &results) | CIgBlast | private |
| x_ExtendAlign5end(CRef< CSearchResultSet > &results) | CIgBlast | private |
| x_FillJDomain(CRef< CSeq_align > &align, CRef< CIgAnnotation > &annot) | CIgBlast | private |
| x_FindDJ(CRef< CSearchResultSet > &results_D, CRef< CSearchResultSet > &results_J, CRef< CIgAnnotation > &annot, CRef< CSeq_align_set > &align_D, CRef< CSeq_align_set > &align_J, string q_ct, bool q_ms, ENa_strand q_st, int q_ve, int iq) | CIgBlast | private |
| x_FindDJAln(CRef< CSeq_align_set > &align_D, CRef< CSeq_align_set > &align_J, string q_ct, bool q_ms, ENa_strand q_st, int q_ve, int iq, bool va_or_vd_as_heavy_chain) | CIgBlast | private |
| x_ProcessCResult(CRef< CSearchResultSet > &results_C, vector< CRef< CIgAnnotation > > &annots) | CIgBlast | private |
| x_ProcessDGeneResult(CRef< CSearchResultSet > &results_V, CRef< CSearchResultSet > &results_D, CRef< CSearchResultSet > &results_J, vector< CRef< CIgAnnotation > > &annots) | CIgBlast | private |
| x_ProcessDJResult(CRef< CSearchResultSet > &results_V, CRef< CSearchResultSet > &results_D, CRef< CSearchResultSet > &results_J, vector< CRef< CIgAnnotation > > &annots) | CIgBlast | private |
| x_ScreenByAlignLength(CRef< CSearchResultSet > &results, int length) | CIgBlast | private |
| x_SetAnnotation(vector< CRef< CIgAnnotation > > &annot, CRef< CSearchResultSet > &final_results) | CIgBlast | private |
| x_SetChainType(CRef< CSearchResultSet > &results, vector< CRef< CIgAnnotation > > &annot) | CIgBlast | private |
| x_SetupCRegionSearch(const vector< CRef< CIgAnnotation > > &annots, CRef< IQueryFactory > &qf, CRef< CBlastOptionsHandle > &opts_hndl) | CIgBlast | private |
| x_SetupDbSearch(vector< CRef< CIgAnnotation > > &annot, CRef< IQueryFactory > &qf) | CIgBlast | private |
| x_SetupDJSearch(const vector< CRef< CIgAnnotation > > &annots, CRef< IQueryFactory > &qf, CRef< CBlastOptionsHandle > &opts_hndl, int db_type) | CIgBlast | private |
| x_SetupNoOverlapDSearch(const vector< CRef< CIgAnnotation > > &annots, CRef< CSearchResultSet > &results, CRef< IQueryFactory > &qf, CRef< CBlastOptionsHandle > &opts_hndl, int db_type) | CIgBlast | private |
| x_SetupVSearch(CRef< IQueryFactory > &qf, CRef< CBlastOptionsHandle > &opts_hndl) | CIgBlast | private |
| ~CDebugDumpable(void) | CDebugDumpable | virtual |
| ~CIgBlast() | CIgBlast | inline |
| ~CObject(void) | CObject | virtual |
1.9.0
Modified on Wed Sep 04 15:06:46 2024 by modify_doxy.py rev. 669887