#include <objects/general/Int_fuzz.hpp>

Inheritance diagram for CInt_fuzz:

Collaboration diagram for CInt_fuzz:

Public Types
enum	ECombine { eAmplify , eReduce }

Public Types inherited from CInt_fuzz_Base
enum	ELim { eLim_unk = 0 , eLim_gt = 1 , eLim_lt = 2 , eLim_tr = 3 , eLim_tl = 4 , eLim_circle = 5 , eLim_other = 255 }
	some limit value More...

enum	E_Choice { e_not_set = 0 , e_P_m , e_Range , e_Pct , e_Lim , e_Alt }
	Choice variants. More...

enum	E_ChoiceStopper { e_MaxChoice = 6 }
	Maximum+1 value of the choice variant enumerator. More...

typedef TSeqPos	TP_m

typedef C_Range	TRange

typedef int	TPct

typedef ELim	TLim

typedef list< TSeqPos >	TAlt

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CInt_fuzz (void)

	~CInt_fuzz (void)

void	GetLabel (string *label, TSeqPos pos, bool right=true) const

void	AssignTranslated (const CInt_fuzz &f2, TSeqPos n1, TSeqPos n2)
	n1 and n2 are the targets of the fuzz More...

void	Add (const CInt_fuzz &f2, TSeqPos &n1, TSeqPos n2, ECombine mode=eAmplify)

void	Subtract (const CInt_fuzz &f2, TSeqPos &n1, TSeqPos n2, ECombine mode=eReduce)

void	Negate (TSeqPos n)

CRef< CInt_fuzz >	Negative (TSeqPos n) const

Public Member Functions inherited from CInt_fuzz_Base
	CInt_fuzz_Base (void)

virtual	~CInt_fuzz_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

virtual void	Reset (void)
	Reset the whole object. More...

virtual void	ResetSelection (void)
	Reset the selection (set it to e_not_set). More...

E_Choice	Which (void) const
	Which variant is currently selected. More...

void	CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...

void	ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...

void	Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...

void	Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...

bool	IsP_m (void) const
	Check if variant P_m is selected. More...

TP_m	GetP_m (void) const
	Get the variant data. More...

TP_m &	SetP_m (void)
	Select the variant. More...

void	SetP_m (TP_m value)
	Select the variant and set its data. More...

bool	IsRange (void) const
	Check if variant Range is selected. More...

const TRange &	GetRange (void) const
	Get the variant data. More...

TRange &	SetRange (void)
	Select the variant. More...

void	SetRange (TRange &value)
	Select the variant and set its data. More...

bool	IsPct (void) const
	Check if variant Pct is selected. More...

TPct	GetPct (void) const
	Get the variant data. More...

TPct &	SetPct (void)
	Select the variant. More...

void	SetPct (TPct value)
	Select the variant and set its data. More...

bool	IsLim (void) const
	Check if variant Lim is selected. More...

TLim	GetLim (void) const
	Get the variant data. More...

TLim &	SetLim (void)
	Select the variant. More...

void	SetLim (TLim value)
	Select the variant and set its data. More...

bool	IsAlt (void) const
	Check if variant Alt is selected. More...

const TAlt &	GetAlt (void) const
	Get the variant data. More...

TAlt &	SetAlt (void)
	Select the variant. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Private Types
typedef CInt_fuzz_Base	Tparent

Private Member Functions
	CInt_fuzz (const CInt_fuzz &value)

CInt_fuzz &	operator= (const CInt_fuzz &value)

Additional Inherited Members
Static Public Member Functions inherited from CInt_fuzz_Base
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	ELim (void)
	Access to ELim's attributes (values, names) as defined in spec. More...

static string	SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 53 of file Int_fuzz.hpp.

Member Typedef Documentation

◆ Tparent

typedef CInt_fuzz_Base CInt_fuzz::Tparent

private

Definition at line 55 of file Int_fuzz.hpp.

Member Enumeration Documentation

◆ ECombine

enum CInt_fuzz::ECombine

Enumerator
eAmplify	go for the largest possible range
eReduce	go for the smallest range that allows each value individually to vary freely as long as the other balances it out to the extent possible

Definition at line 67 of file Int_fuzz.hpp.

Constructor & Destructor Documentation

◆ CInt_fuzz() [1/2]

CInt_fuzz::CInt_fuzz ( void )

inline

Definition at line 100 of file Int_fuzz.hpp.

◆ ~CInt_fuzz()

CInt_fuzz::~CInt_fuzz ( void )

Definition at line 56 of file Int_fuzz.cpp.

◆ CInt_fuzz() [2/2]

CInt_fuzz::CInt_fuzz ( const CInt_fuzz & value )

private

Member Function Documentation

◆ Add()

void CInt_fuzz::Add	(	const CInt_fuzz &	f2,
		TSeqPos &	n1,
		TSeqPos	n2,
		ECombine	mode = `eAmplify`
	)

Definition at line 143 of file Int_fuzz.cpp.

References delta(), CInt_fuzz_Base::e_Alt, CInt_fuzz_Base::e_Lim, CInt_fuzz_Base::e_P_m, CInt_fuzz_Base::e_Pct, CInt_fuzz_Base::e_Range, CInt_fuzz_Base::eLim_circle, CInt_fuzz_Base::eLim_gt, CInt_fuzz_Base::eLim_lt, CInt_fuzz_Base::eLim_tl, CInt_fuzz_Base::eLim_tr, CInt_fuzz_Base::eLim_unk, eReduce, f, i, ITERATE, n, offsets, r(), CInt_fuzz_Base::SetAlt(), CInt_fuzz_Base::SetLim(), CInt_fuzz_Base::SetP_m(), CInt_fuzz_Base::SetPct(), CInt_fuzz_Base::SetRange(), and swap().

Referenced by Subtract().

◆ AssignTranslated()

void CInt_fuzz::AssignTranslated	(	const CInt_fuzz &	f2,
		TSeqPos	n1,
		TSeqPos	n2
	)

n1 and n2 are the targets of the fuzz

Definition at line 120 of file Int_fuzz.cpp.

References CSerialObject::Assign(), CInt_fuzz_Base::e_Alt, CInt_fuzz_Base::e_Pct, CInt_fuzz_Base::e_Range, CInt_fuzz_Base::GetAlt(), CInt_fuzz_Base::C_Range::GetMax(), CInt_fuzz_Base::C_Range::GetMin(), CInt_fuzz_Base::GetPct(), CInt_fuzz_Base::GetRange(), ITERATE, CInt_fuzz_Base::SetAlt(), CInt_fuzz_Base::C_Range::SetMax(), CInt_fuzz_Base::C_Range::SetMin(), CInt_fuzz_Base::SetPct(), CInt_fuzz_Base::SetRange(), and CInt_fuzz_Base::Which().

◆ GetLabel()

void CInt_fuzz::GetLabel	(	string *	label,
		TSeqPos	pos,
		bool	right = `true`
	)		const

◆ Negate()

void CInt_fuzz::Negate ( TSeqPos n )

Definition at line 319 of file Int_fuzz.cpp.

References CInt_fuzz_Base::e_Alt, CInt_fuzz_Base::e_Lim, CInt_fuzz_Base::e_P_m, CInt_fuzz_Base::e_Pct, CInt_fuzz_Base::e_Range, CInt_fuzz_Base::eLim_gt, CInt_fuzz_Base::eLim_lt, CInt_fuzz_Base::eLim_tl, CInt_fuzz_Base::eLim_tr, CInt_fuzz_Base::GetLim(), n, NON_CONST_ITERATE, r(), CInt_fuzz_Base::SetAlt(), CInt_fuzz_Base::SetLim(), CInt_fuzz_Base::SetRange(), and CInt_fuzz_Base::Which().

◆ Negative()

CRef< CInt_fuzz > CInt_fuzz::Negative ( TSeqPos n ) const

inline

Definition at line 106 of file Int_fuzz.hpp.

References n, and result.

Referenced by SRelLoc::SRelLoc(), Subtract(), and CAlignmentAssistant::TranslateLocations().

◆ operator=()

CInt_fuzz& CInt_fuzz::operator= ( const CInt_fuzz & value )

private

◆ Subtract()

void CInt_fuzz::Subtract	(	const CInt_fuzz &	f2,
		TSeqPos &	n1,
		TSeqPos	n2,
		ECombine	mode = `eReduce`
	)

inline

Definition at line 116 of file Int_fuzz.hpp.

References Add(), and Negative().

The documentation for this class was generated from the following files:

include/objects/general/Int_fuzz.hpp
src/objects/general/Int_fuzz.cpp

Public Types

Public Member Functions

Private Types

Private Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Tparent

Member Enumeration Documentation

◆ ECombine

Constructor & Destructor Documentation

◆ CInt_fuzz() [1/2]

◆ ~CInt_fuzz()

◆ CInt_fuzz() [2/2]

Member Function Documentation

◆ Add()

◆ AssignTranslated()

◆ GetLabel()

◆ Negate()

◆ Negative()

◆ operator=()

◆ Subtract()