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Public Types | Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members

Represents ASN.1 type Intron-params defined in file gnomon.asn

Search Toolkit Book for CIntron_params_Base

CIntron_params_Base –. More...

#include <algo/gnomon/Intron_params_.hpp>

+ Inheritance diagram for CIntron_params_Base:
+ Collaboration diagram for CIntron_params_Base:

Public Types

enum class  E_memberIndex {
  e__allMandatory = 0 , e_initp , e_phase_probabilities , e_to_term ,
  e_length
}
 
typedef double TInitp
 
typedef list< double > TPhase_probabilities
 
typedef double TTo_term
 
typedef CLength_distribution_params TLength
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CIntron_params_Base (void)
 
virtual ~CIntron_params_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetInitp (void) const
 probability of a genomic point be in an intron Check if a value has been assigned to Initp data member. More...
 
bool CanGetInitp (void) const
 Check if it is safe to call GetInitp method. More...
 
void ResetInitp (void)
 Reset Initp data member. More...
 
TInitp GetInitp (void) const
 Get the Initp member data. More...
 
void SetInitp (TInitp value)
 Assign a value to Initp data member. More...
 
TInitpSetInitp (void)
 Assign a value to Initp data member. More...
 
bool IsSetPhase_probabilities (void) const
 3 elements (per phase) Check if a value has been assigned to Phase_probabilities data member. More...
 
bool CanGetPhase_probabilities (void) const
 Check if it is safe to call GetPhase_probabilities method. More...
 
void ResetPhase_probabilities (void)
 Reset Phase_probabilities data member. More...
 
const TPhase_probabilitiesGetPhase_probabilities (void) const
 Get the Phase_probabilities member data. More...
 
TPhase_probabilitiesSetPhase_probabilities (void)
 Assign a value to Phase_probabilities data member. More...
 
bool IsSetTo_term (void) const
 probability to be the last Check if a value has been assigned to To_term data member. More...
 
bool CanGetTo_term (void) const
 Check if it is safe to call GetTo_term method. More...
 
void ResetTo_term (void)
 Reset To_term data member. More...
 
TTo_term GetTo_term (void) const
 Get the To_term member data. More...
 
void SetTo_term (TTo_term value)
 Assign a value to To_term data member. More...
 
TTo_termSetTo_term (void)
 Assign a value to To_term data member. More...
 
bool IsSetLength (void) const
 Check if a value has been assigned to Length data member. More...
 
bool CanGetLength (void) const
 Check if it is safe to call GetLength method. More...
 
void ResetLength (void)
 Reset Length data member. More...
 
const TLengthGetLength (void) const
 Get the Length member data. More...
 
void SetLength (TLength &value)
 Assign a value to Length data member. More...
 
TLengthSetLength (void)
 Assign a value to Length data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 CIntron_params_Base (const CIntron_params_Base &)
 
CIntron_params_Baseoperator= (const CIntron_params_Base &)
 

Private Attributes

Uint4 m_set_State [1]
 
double m_Initp
 
list< double > m_Phase_probabilities
 
double m_To_term
 
CRef< TLengthm_Length
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CIntron_params_Base –.

Definition at line 76 of file Intron_params_.hpp.


The documentation for this class was generated from the following files:
Modified on Thu Mar 28 17:07:53 2024 by modify_doxy.py rev. 669887