#include <gui/packages/pkg_snp/ld/ld_glyph.hpp>

Inheritance diagram for CLDBlockGlyph:

Collaboration diagram for CLDBlockGlyph:

Classes
struct	SValue

Public Member Functions
void	SetName (const string &name)
	CLDBlockGlyph inline method implementation. More...

ctors
	CLDBlockGlyph (const objects::CMappedFeat &feat)

Non-Inherited Getters
const string &	GetName () const

Public Member Functions inherited from CSeqGlyph
	CSeqGlyph ()

virtual	~CSeqGlyph ()

virtual CRef< CSeqGlyph >	HitTest (const TModelPoint &p)
	Hit testing. More...

virtual bool	HitTestHor (TSeqPos x, const CObject *obj)

virtual bool	Intersects (const TModelRect &rect, TConstObjects &objs) const
	Intersect testing. More...

virtual void	GetHTMLActiveAreas (TAreaVector *) const
	Get html active areas. More...

virtual void	Update (bool)
	Update content and layout including the bounding box. More...

virtual bool	Accept (IGlyphVisitor *visitor)
	Interface for accepting an IGlyphVisitor. More...

virtual bool	SetSelected (bool flag)
	Select or deselect this glyph. More...

virtual void	SetHideLabel (bool)
	Force to hide label. More...

virtual bool	HasSideLabel () const
	Query if there is label and label is on the side. More...

virtual bool	LessBySeqPos (const CSeqGlyph &obj) const
	compare this object to another based on glyph sequence position. More...

bool	LessByPos (const CSeqGlyph &obj) const
	compare this object to another, based on glyph geometry position. More...

bool	LessBySeqSize (const CSeqGlyph &obj) const
	compare this object to another, based on sequence size. More...

bool	LessBySize (const CSeqGlyph &obj) const
	compare this object to another, based on geometry size. More...

void	Draw () const
	render the layout. More...

TModelRect	GetModelRect () const
	get the bounding box. More...

bool	IsIn (const TModelPoint &p) const
	Hit test for points in PARENT COORD. More...

bool	IsIn (TModelUnit x, TModelUnit y) const

bool	IsInHor (TModelUnit x) const

void	SetRender (IGlyphRenderer *renderer)
	set customized renderer for this layout objects. More...

void	SetRenderingContext (CRenderingContext *context)
	Set the rendering context. More...

const CRenderingContext *	GetRenderingContext () const
	Get the rendering context. More...

void	SetTearline (size_t Tearline)
	tearline factor – used to limit a list of glyphs More...

size_t	GetTearline () const

void	SetTearlineText (const string &sTearlineText)
	tearline text – if set, is appended to the glyph name (does not naffect processing otherwise) More...

string	GetTearlineText () const

void	SetRowNum (size_t cur_row)

size_t	GetRowNum () const

void	SetVisible (size_t v)

size_t	GetVisible () const

int	GetLevel () const

void	SetLevel (int Level)

virtual string	GetPName () const
	persistent name of the glyph should not depend on the instance of the glyph, but should uniquely reflect its contents so two glyphs having the same contents will have the same name currently used to track isDrawn() status for expandable glyphs default implementation returns an empty string implementations exist for CFeatGlyph (name of the contained feature) and CLayoutGroup (concatenation of all sorted children names) More...

float	GetFadeFactor () const

virtual bool	OnLeftDown (const TModelPoint &)

virtual bool	OnLeftUp (const TModelPoint &)

virtual bool	OnContextMenu (wxContextMenuEvent &event)

bool	IsSelected () const

bool	IsHighlighted () const

CRgbaColor *	GetHighlightsColor () const

virtual TModelUnit	GetHeight () const

virtual TModelUnit	GetWidth () const

virtual TModelUnit	GetLeft () const

virtual TModelUnit	GetTop () const

virtual TModelUnit	GetRight () const

virtual TModelUnit	GetBottom () const

const TModelPoint &	GetPos () const

void	GetPosInWorld (TModelPoint &pos) const
	Get top left position in world coordinate. More...

const CSeqGlyph *	GetParent (void) const

CSeqGlyph *	GetParent (void)

ENeighbours	GetNeighbours () const

void	SetHighlighted (bool flag)

void	SetHighlightsColor (const CRgbaColor &hl_color)

void	SetHighlightsColor (const string &hl_color_str)

virtual void	SetWidth (TModelUnit w)

virtual void	SetHeight (TModelUnit h)

virtual void	SetLeft (TModelUnit l)

virtual void	SetTop (TModelUnit b)

virtual void	SetPos (const TModelPoint &upper_left)

void	SetParent (CSeqGlyph *p)

CSeqGlyph *	SetParent (void)

void	SetNeighbours (ENeighbours neighbours)

Public Member Functions inherited from CObjectEx
	CObjectEx (void)

virtual	~CObjectEx (void)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Member Functions inherited from CWeakObject
	CWeakObject (void)

virtual	~CWeakObject (void)

CPtrToObjectProxy *	GetPtrProxy (void) const
	Get pointer to proxy object containing pointer to this object. More...

Static Public Member Functions
Static Methods
static string	GenerateBinSignature (unsigned int rsid, const string &title, int gi, TSeqRange range)

Static Public Member Functions inherited from CSeqGlyph
static bool	PointInRect (const TModelPoint &p, const TModelRect &rc)

static bool	PointInRect (TModelUnit x, TModelUnit y, const TModelRect &rc)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Member Functions
void	x_BuildObjectList () const

TSeqRange	x_GetBinRange (unsigned int bin) const

Private Attributes
string	m_Name

CConstRef< objects::CSeq_loc >	m_Location

SValue	m_Value

CSeqGlyph virtual methods.
virtual bool	OnLeftDblClick (const TModelPoint &p)

virtual bool	NeedTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Check if need to show tooltip. More...

virtual void	GetTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Get the tooltip if available. More...

virtual bool	IsClickable () const
	Query if this glyph is clickable. More...

virtual TSeqRange	GetRange (void) const
	get the total range of this object. More...

virtual void	x_Draw () const
	The default renderer for this layout object. More...

virtual void	x_UpdateBoundingBox ()
	Update the bounding box assuming children's sizes are fixed if any. More...

Additional Inherited Members
Public Types inherited from CSeqGlyph
enum	ENeighbours { eNghbrs_None = 0x0 , eNghbrs_Left = 0x1 , eNghbrs_Right = 0x2 , eNghbrs_Both = 0x3 }

typedef vector< CHTMLActiveArea >	TAreaVector

typedef list< CRef< CSeqGlyph > >	TObjects

typedef list< CConstRef< CSeqGlyph > >	TConstObjects

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CSeqGlyph
virtual void	x_DrawHighlight () const

void	x_DrawInnerLabelColumns (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible) const

void	x_DrawInnerLabels (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible, bool inside_only, vector< TModelRange > labels_ranges=nullptr, TSeqRange interval=nullptr, bool XOR_mode=false) const

void	x_DrawTruncatedLabel (const string &label, const CGlTextureFont &font, TModelUnit width, TModelUnit x, TModelUnit y, vector< TModelRange > *labels_ranges=nullptr) const

void	x_DrawException () const
	Draw a shading background to indicate exception. More...

virtual void	x_OnLayoutChanged ()
	update the layout. More...

void	x_Parent2Local (TModelPoint &pnt) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelUnit &, TModelUnit &y) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelRect &rect) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_World2Local (TModelPoint &p) const
	Transform the coordiante from world coord. to local coord. More...

void	x_World2Local (TModelUnit &x, TModelUnit &y) const

void	x_Local2World (TModelPoint &p) const
	Transform the coordiantes from local coord. to world coord. More...

void	x_Local2World (TModelUnit &x, TModelUnit &y) const

void	x_InitHTMLActiveArea (CHTMLActiveArea &area) const
	initialize the basic information for a given active area. More...

bool	x_Visible_V () const
	is this glyph visible in vertical direction? More...

template<class T >
bool	x_IntersectVisible (const CRange< T > &SeqRange, T &from, T &to) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Member Functions inherited from CWeakObject
void	CleanWeakRefs (void) const
	Method cleaning all CWeakRefs referencing at this moment to the object After calling to this method all existing CWeakRefs referencing to the object will return NULL, so it effectively will be equal to deleting the object. More...

Protected Attributes inherited from CSeqGlyph
CSeqGlyph *	m_Parent
	parent/child relationships for this feature More...

CRenderingContext *	m_Context
	the rendering context More...

unique_ptr< CRgbaColor >	m_HighlightsColor
	Highlight color. More...

ENeighbours	m_Neighbours
	Indicates whether the glyph has neighbours. More...

Detailed Description

Definition at line 44 of file ld_glyph.hpp.

Constructor & Destructor Documentation

◆ CLDBlockGlyph()

CLDBlockGlyph::CLDBlockGlyph ( const objects::CMappedFeat & feat )

Definition at line 72 of file ld_glyph.cpp.

References CLDBlockGlyph::SValue::blockId, CUser_field_Base::GetData(), CSeq_feat_Base::GetData(), CUser_object::GetField(), CUser_field_Base::C_Data::GetInt(), CMappedFeat::GetLocation(), CMappedFeat::GetOriginalFeature(), CUser_field_Base::C_Data::GetReal(), CSeqFeatData_Base::GetUser(), m_Location, m_Value, CLDBlockGlyph::SValue::popId, CConstRef< C, Locker >::Reset(), and CLDBlockGlyph::SValue::score.

Member Function Documentation

◆ GenerateBinSignature()

static string CLDBlockGlyph::GenerateBinSignature	(	unsigned int	rsid,
		const string &	title,
		int	gi,
		TSeqRange	range
	)

static

◆ GetName()

const string & CLDBlockGlyph::GetName ( void ) const

inline

Definition at line 129 of file ld_glyph.hpp.

References m_Name.

◆ GetRange()

TSeqRange CLDBlockGlyph::GetRange ( void ) const

virtual

get the total range of this object.

CSeqGlyph inline methods.

Reimplemented from CSeqGlyph.

Definition at line 204 of file ld_glyph.cpp.

References m_Location.

Referenced by OnLeftDblClick(), x_Draw(), and x_UpdateBoundingBox().

◆ GetTooltip()

void CLDBlockGlyph::GetTooltip	(	const TModelPoint &	,
		ITooltipFormatter &	tt,
		string &	t_title
	)		const

virtual

Get the tooltip if available.

The x and y are in 'world' coord system which is the coord. system for the uppermost layout object.

Reimplemented from CSeqGlyph.

Definition at line 108 of file ld_glyph.cpp.

References ITooltipFormatter::AddRow(), NStr::DoubleToString(), NStr::IntToString(), m_Value, CLDBlockGlyph::SValue::popId, and CLDBlockGlyph::SValue::score.

Referenced by NeedTooltip().

◆ IsClickable()

bool CLDBlockGlyph::IsClickable ( ) const

virtual

Query if this glyph is clickable.

Mainly for chaging mouse cursor for clickable glyph. By default, it returns false. If a glyph is clickable, but there is no need to change mouse cursor due to any other reason, such as there is already other visual hint, then don't need to override this function.

Reimplemented from CSeqGlyph.

Definition at line 115 of file ld_glyph.cpp.

◆ NeedTooltip()

bool CLDBlockGlyph::NeedTooltip	(	const TModelPoint &	,
		ITooltipFormatter &	,
		string &	t_title
	)		const

virtual

Check if need to show tooltip.

If the tooltip retrieval is trivial, the derived glyph may decide to fill out the tooltip (info object) in this call.

Reimplemented from CSeqGlyph.

Definition at line 101 of file ld_glyph.cpp.

References GetTooltip().

◆ OnLeftDblClick()

bool CLDBlockGlyph::OnLeftDblClick ( const TModelPoint & p )

virtual

Reimplemented from CSeqGlyph.

Definition at line 84 of file ld_glyph.cpp.

References GetRange(), CRenderingContext::GetScope(), NStr::IntToString(), CSeqGlyph::m_Context, m_Location, CAppPopup::PopupURL(), compile_time_bits::range(), and s_ChrName().

◆ SetName()

void CLDBlockGlyph::SetName ( const string & name )

inline

CLDBlockGlyph inline method implementation.

Definition at line 125 of file ld_glyph.hpp.

References m_Name.

◆ x_BuildObjectList()

void CLDBlockGlyph::x_BuildObjectList ( ) const

private

◆ x_Draw()

void CLDBlockGlyph::x_Draw ( ) const

protectedvirtual

The default renderer for this layout object.

Implements CSeqGlyph.

Definition at line 121 of file ld_glyph.cpp.

References B, IRender::Begin(), CLDBlockGlyph::SValue::blockId, color, IRender::Color3f(), IRender::ColorC(), CRenderingContext::DrawRect(), CGlTextureFont::eFontFace_Helvetica_Bold, IRender::End(), G, GetGl(), CSeqGlyph::GetHeight(), CRenderingContext::GetOffset(), GetRange(), CSeqGlyph::GetTop(), int, NStr::IntToString(), label, CRgbaColor::Lighten(), CSeqGlyph::m_Context, m_Value, offset, compile_time_bits::range(), CLDBlockGlyph::SValue::score, IRender::ShadeModel(), CRenderingContext::TextOut(), IRender::Vertex2d(), and CRenderingContext::WillLabelFit().

◆ x_GetBinRange()

TSeqRange CLDBlockGlyph::x_GetBinRange ( unsigned int bin ) const

private

◆ x_UpdateBoundingBox()

void CLDBlockGlyph::x_UpdateBoundingBox ( )

protectedvirtual

Update the bounding box assuming children's sizes are fixed if any.

Implements CSeqGlyph.

Definition at line 196 of file ld_glyph.cpp.

References GetRange(), compile_time_bits::range(), CSeqGlyph::SetHeight(), CSeqGlyph::SetLeft(), and CSeqGlyph::SetWidth().

Member Data Documentation

◆ m_Location

CConstRef<objects::CSeq_loc> CLDBlockGlyph::m_Location

private

Definition at line 118 of file ld_glyph.hpp.

Referenced by CLDBlockGlyph(), GetRange(), and OnLeftDblClick().

◆ m_Name

string CLDBlockGlyph::m_Name

private

Definition at line 116 of file ld_glyph.hpp.

Referenced by GetName(), and SetName().

◆ m_Value

SValue CLDBlockGlyph::m_Value

private

Definition at line 119 of file ld_glyph.hpp.

Referenced by CLDBlockGlyph(), GetTooltip(), and x_Draw().

The documentation for this class was generated from the following files:

include/gui/packages/pkg_snp/ld/ld_glyph.hpp
src/gui/packages/pkg_snp/ld/ld_glyph.cpp

Classes

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

CSeqGlyph virtual methods.

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CLDBlockGlyph()

Member Function Documentation

◆ GenerateBinSignature()

◆ GetName()

◆ GetRange()

◆ GetTooltip()

◆ IsClickable()

◆ NeedTooltip()

◆ OnLeftDblClick()

◆ SetName()

◆ x_BuildObjectList()

◆ x_Draw()

◆ x_GetBinRange()

◆ x_UpdateBoundingBox()

Member Data Documentation

◆ m_Location

◆ m_Name

◆ m_Value