NCBI C++ ToolKit
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CLinkage_evidence Class Reference

Represents ASN.1 type Linkage-evidence defined in file seq.asn

Search Toolkit Book for CLinkage_evidence

#include <objects/seq/Linkage_evidence.hpp>

+ Inheritance diagram for CLinkage_evidence:
+ Collaboration diagram for CLinkage_evidence:

Public Types

typedef list< CRef< CLinkage_evidence > > TLinkage_evidence
 
- Public Types inherited from CLinkage_evidence_Base
enum  EType {
  eType_paired_ends = 0 , eType_align_genus = 1 , eType_align_xgenus = 2 , eType_align_trnscpt = 3 ,
  eType_within_clone = 4 , eType_clone_contig = 5 , eType_map = 6 , eType_strobe = 7 ,
  eType_unspecified = 8 , eType_pcr = 9 , eType_proximity_ligation = 10 , eType_other = 255
}
 
enum class  E_memberIndex { e__allMandatory = 0 , e_type }
 
typedef int TType
 
typedef Tparent::CMemberIndex< E_memberIndex, 2 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CLinkage_evidence (void)
 
 ~CLinkage_evidence (void)
 
- Public Member Functions inherited from CLinkage_evidence_Base
 CLinkage_evidence_Base (void)
 
virtual ~CLinkage_evidence_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetType (void) const
 Check if a value has been assigned to Type data member. More...
 
bool CanGetType (void) const
 Check if it is safe to call GetType method. More...
 
void ResetType (void)
 Reset Type data member. More...
 
TType GetType (void) const
 Get the Type member data. More...
 
void SetType (TType value)
 Assign a value to Type data member. More...
 
TTypeSetType (void)
 Assign a value to Type data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Static Public Member Functions

static bool GetLinkageEvidence (TLinkage_evidence &output_result, const string &linkage_evidence)
 
static bool GetLinkageEvidence (TLinkage_evidence &output_result, const vector< string > &linkage_evidence)
 
static bool VecToString (string &output_result, const TLinkage_evidence &linkage_evidence)
 
- Static Public Member Functions inherited from CLinkage_evidence_Base
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() EType (void)
 Access to EType's attributes (values, names) as defined in spec. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Private Types

typedef CLinkage_evidence_Base Tparent
 

Private Member Functions

 CLinkage_evidence (const CLinkage_evidence &value)
 
CLinkage_evidenceoperator= (const CLinkage_evidence &value)
 

Additional Inherited Members

- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 53 of file Linkage_evidence.hpp.

Member Typedef Documentation

◆ TLinkage_evidence

Definition at line 62 of file Linkage_evidence.hpp.

◆ Tparent

Definition at line 55 of file Linkage_evidence.hpp.

Constructor & Destructor Documentation

◆ CLinkage_evidence() [1/2]

CLinkage_evidence::CLinkage_evidence ( void  )
inline

Definition at line 108 of file Linkage_evidence.hpp.

Referenced by GetLinkageEvidence().

◆ ~CLinkage_evidence()

CLinkage_evidence::~CLinkage_evidence ( void  )

Definition at line 54 of file Linkage_evidence.cpp.

◆ CLinkage_evidence() [2/2]

CLinkage_evidence::CLinkage_evidence ( const CLinkage_evidence value)
private

Member Function Documentation

◆ GetLinkageEvidence() [1/2]

bool CLinkage_evidence::GetLinkageEvidence ( TLinkage_evidence output_result,
const string linkage_evidence 
)
static

Definition at line 58 of file Linkage_evidence.cpp.

References NStr::Split().

Referenced by BOOST_AUTO_TEST_CASE().

◆ GetLinkageEvidence() [2/2]

bool CLinkage_evidence::GetLinkageEvidence ( TLinkage_evidence output_result,
const vector< string > &  linkage_evidence 
)
static

◆ operator=()

CLinkage_evidence& CLinkage_evidence::operator= ( const CLinkage_evidence value)
private

◆ VecToString()

bool CLinkage_evidence::VecToString ( string output_result,
const TLinkage_evidence linkage_evidence 
)
static

The documentation for this class was generated from the following files:
Modified on Thu May 30 12:23:10 2024 by modify_doxy.py rev. 669887