NCBI C++ ToolKit
CLocalVDBBlast Member List

This is the complete list of members for CLocalVDBBlast, including all inherited members.

AddReference(void) constCObjectinline
CanBeDeleted(void) const THROWS_NONECObjectinline
CDebugDumpable(void)CDebugDumpableinline
CheckReferenceOverflow(TCount count) constCObjectprivate
CLocalVDBBlast(const CLocalVDBBlast &)CLocalVDBBlastprivate
CLocalVDBBlast(CRef< CBlastQueryVector > query_vector, CRef< CBlastOptionsHandle > options, CLocalVDBBlast::SLocalVDBStruct &local_vdb, bool include_filtered_reads=false)CLocalVDBBlast
CLocalVDBBlast(CRef< objects::CPssmWithParameters > pssm, CRef< CBlastOptionsHandle > options, SLocalVDBStruct &local_vdb, bool include_filtered_reads=false)CLocalVDBBlast
CObject(void)CObject
CObject(const CObject &src)CObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
eAligned enum valueCLocalVDBBlast
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eBoth enum valueCLocalVDBBlast
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
ESRASearchMode enum nameCLocalVDBBlast
eUnaligned enum valueCLocalVDBBlast
GetAllocFillMode(void)CObjectstatic
GetNumExtensions()CLocalVDBBlast
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
kDisableThreadedSearchCLocalVDBBlaststatic
m_chunks_for_threadCLocalVDBBlastprivate
m_CounterCObjectmutableprivate
m_include_filtered_readsCLocalVDBBlastprivate
m_num_extensionsCLocalVDBBlastprivate
m_num_threadsCLocalVDBBlastprivate
m_opt_handleCLocalVDBBlastprivate
m_pssmCLocalVDBBlastprivate
m_query_vectorCLocalVDBBlastprivate
m_total_lengthCLocalVDBBlastprivate
m_total_num_seqsCLocalVDBBlastprivate
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CLocalVDBBlast &)CLocalVDBBlastprivate
CObject::operator=(const CObject &src) THROWS_NONECObjectinline
PreprocessDBs(CLocalVDBBlast::SLocalVDBStruct &local_vdb, const string db_names, unsigned int num_threads=kDisableThreadedSearch, ESRASearchMode seach_mode=eAligned)CLocalVDBBlaststatic
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
Run()CLocalVDBBlast
RunThreadedSearch()CLocalVDBBlastprivate
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
sm_DumpEnabledCDebugDumpableprivatestatic
TCount typedefCObject
TCounter typedefCObject
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TLockerType typedefCObject
x_AdjustDbSize(void)CLocalVDBBlastprivate
x_PreparePssm(vector< CRef< CPssmWithParameters > > &pssm)CLocalVDBBlastprivate
x_PrepareQuery(vector< CRef< IQueryFactory > > &qf_v)CLocalVDBBlastprivate
~CDebugDumpable(void)CDebugDumpablevirtual
~CLocalVDBBlast()CLocalVDBBlastinline
~CObject(void)CObjectvirtual
Modified on Tue Feb 27 05:50:40 2024 by modify_doxy.py rev. 669887