Search Toolkit Book for CMSModSpec
#include <objects/omssa/MSModSpec.hpp>
Inheritance diagram for CMSModSpec:
Collaboration diagram for CMSModSpec:
Public Member Functions | |
| CMSModSpec (void) | |
| ~CMSModSpec (void) | |
| Public Member Functions inherited from CMSModSpec_Base | |
| CMSModSpec_Base (void) | |
| virtual | ~CMSModSpec_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetMod (void) const |
| what is the mod Check if a value has been assigned to Mod data member. More... | |
| bool | CanGetMod (void) const |
| Check if it is safe to call GetMod method. More... | |
| void | ResetMod (void) |
| Reset Mod data member. More... | |
| TMod | GetMod (void) const |
| Get the Mod member data. More... | |
| void | SetMod (TMod value) |
| Assign a value to Mod data member. More... | |
| TMod & | SetMod (void) |
| Assign a value to Mod data member. More... | |
| bool | IsSetType (void) const |
| modification type Check if a value has been assigned to Type data member. More... | |
| bool | CanGetType (void) const |
| Check if it is safe to call GetType method. More... | |
| void | ResetType (void) |
| Reset Type data member. More... | |
| TType | GetType (void) const |
| Get the Type member data. More... | |
| void | SetType (TType value) |
| Assign a value to Type data member. More... | |
| TType & | SetType (void) |
| Assign a value to Type data member. More... | |
| bool | IsSetName (void) const |
| friendly name of mod Check if a value has been assigned to Name data member. More... | |
| bool | CanGetName (void) const |
| Check if it is safe to call GetName method. More... | |
| void | ResetName (void) |
| Reset Name data member. More... | |
| const TName & | GetName (void) const |
| Get the Name member data. More... | |
| void | SetName (const TName &value) |
| Assign a value to Name data member. More... | |
| void | SetName (TName &&value) |
| TName & | SetName (void) |
| Assign a value to Name data member. More... | |
| bool | IsSetMonomass (void) const |
| monoisotopic mass Check if a value has been assigned to Monomass data member. More... | |
| bool | CanGetMonomass (void) const |
| Check if it is safe to call GetMonomass method. More... | |
| void | ResetMonomass (void) |
| Reset Monomass data member. More... | |
| TMonomass | GetMonomass (void) const |
| Get the Monomass member data. More... | |
| void | SetMonomass (TMonomass value) |
| Assign a value to Monomass data member. More... | |
| TMonomass & | SetMonomass (void) |
| Assign a value to Monomass data member. More... | |
| bool | IsSetAveragemass (void) const |
| average mass Check if a value has been assigned to Averagemass data member. More... | |
| bool | CanGetAveragemass (void) const |
| Check if it is safe to call GetAveragemass method. More... | |
| void | ResetAveragemass (void) |
| Reset Averagemass data member. More... | |
| TAveragemass | GetAveragemass (void) const |
| Get the Averagemass member data. More... | |
| void | SetAveragemass (TAveragemass value) |
| Assign a value to Averagemass data member. More... | |
| TAveragemass & | SetAveragemass (void) |
| Assign a value to Averagemass data member. More... | |
| bool | IsSetN15mass (void) const |
| monoisotopic n15 mass Check if a value has been assigned to N15mass data member. More... | |
| bool | CanGetN15mass (void) const |
| Check if it is safe to call GetN15mass method. More... | |
| void | ResetN15mass (void) |
| Reset N15mass data member. More... | |
| TN15mass | GetN15mass (void) const |
| Get the N15mass member data. More... | |
| void | SetN15mass (TN15mass value) |
| Assign a value to N15mass data member. More... | |
| TN15mass & | SetN15mass (void) |
| Assign a value to N15mass data member. More... | |
| bool | IsSetResidues (void) const |
| residues to apply mod to Check if a value has been assigned to Residues data member. More... | |
| bool | CanGetResidues (void) const |
| Check if it is safe to call GetResidues method. More... | |
| void | ResetResidues (void) |
| Reset Residues data member. More... | |
| const TResidues & | GetResidues (void) const |
| Get the Residues member data. More... | |
| TResidues & | SetResidues (void) |
| Assign a value to Residues data member. More... | |
| bool | IsSetNeutralloss (void) const |
| loss after precursor mass determination Check if a value has been assigned to Neutralloss data member. More... | |
| bool | CanGetNeutralloss (void) const |
| Check if it is safe to call GetNeutralloss method. More... | |
| void | ResetNeutralloss (void) |
| Reset Neutralloss data member. More... | |
| const TNeutralloss & | GetNeutralloss (void) const |
| Get the Neutralloss member data. More... | |
| void | SetNeutralloss (TNeutralloss &value) |
| Assign a value to Neutralloss data member. More... | |
| TNeutralloss & | SetNeutralloss (void) |
| Assign a value to Neutralloss data member. More... | |
| bool | IsSetUnimod (void) const |
| the equivalent Unimod Accession number Check if a value has been assigned to Unimod data member. More... | |
| bool | CanGetUnimod (void) const |
| Check if it is safe to call GetUnimod method. More... | |
| void | ResetUnimod (void) |
| Reset Unimod data member. More... | |
| TUnimod | GetUnimod (void) const |
| Get the Unimod member data. More... | |
| void | SetUnimod (TUnimod value) |
| Assign a value to Unimod data member. More... | |
| TUnimod & | SetUnimod (void) |
| Assign a value to Unimod data member. More... | |
| bool | IsSetPsi_ms (void) const |
| the PSI-MS equivalent name Check if a value has been assigned to Psi_ms data member. More... | |
| bool | CanGetPsi_ms (void) const |
| Check if it is safe to call GetPsi_ms method. More... | |
| void | ResetPsi_ms (void) |
| Reset Psi_ms data member. More... | |
| const TPsi_ms & | GetPsi_ms (void) const |
| Get the Psi_ms member data. More... | |
| void | SetPsi_ms (const TPsi_ms &value) |
| Assign a value to Psi_ms data member. More... | |
| void | SetPsi_ms (TPsi_ms &&value) |
| TPsi_ms & | SetPsi_ms (void) |
| Assign a value to Psi_ms data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CMSModSpec_Base | Tparent |
Private Member Functions | |
| CMSModSpec (const CMSModSpec &value) | |
| CMSModSpec & | operator= (const CMSModSpec &value) |
Additional Inherited Members | |
| Public Types inherited from CMSModSpec_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_mod , e_type , e_name , e_monomass , e_averagemass , e_n15mass , e_residues , e_neutralloss , e_unimod , e_psi_ms } |
| typedef int | TMod |
| typedef int | TType |
| typedef string | TName |
| typedef double | TMonomass |
| typedef double | TAveragemass |
| typedef double | TN15mass |
| typedef list< string > | TResidues |
| typedef CMSMassSet | TNeutralloss |
| typedef int | TUnimod |
| typedef string | TPsi_ms |
| typedef Tparent::CMemberIndex< E_memberIndex, 11 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CMSModSpec –.
Definition at line 65 of file MSModSpec.hpp.
The documentation for this class was generated from the following files:
- include/objects/omssa/MSModSpec.hpp
- src/objects/omssa/MSModSpec.cpp
