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CMacroFunction_Autodef Class Reference

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#include <gui/objutils/macro_fn_entry.hpp>

+ Inheritance diagram for CMacroFunction_Autodef:
+ Collaboration diagram for CMacroFunction_Autodef:

Public Member Functions

 CMacroFunction_Autodef (EScopeEnum func_scope)
 
virtual void TheFunction ()
 class CMacroFunction_Autodef Autodef(clause_list_type, misc_feat_parse_rule, modifier1, modifier2, ...); More...
 
- Public Member Functions inherited from IEditMacroFunction
virtual ~IEditMacroFunction ()
 Virtual destructor. More...
 
virtual void operator() (CMacroCmdComposite &cmd_composite, CIRef< IMacroBioDataIter > &data, CQueryParseTree::TNode &qnode) override
 Function operator. More...
 
bool SetQualStringValue (CObjectInfo &oi, const string &value)
 Functions make the action and collect statistics. More...
 
bool HasDataChanged () const
 
const CRef< IFunctionLog > & GetFunctionLog () const
 
- Public Member Functions inherited from IMacroFunction< CIRef< IMacroBioDataIter > >
 IMacroFunction (EScopeEnum func_scope)
 Constructor. More...
 
virtual ~IMacroFunction ()
 Virtual destructor. More...
 
EScopeEnum GetFuncScope ()
 
ENestedFunc GetNestedState ()
 
const stringGetFuncReport () const
 Function extracts statistic from the object. More...
 
const stringGetErrorReport () const
 
void SetNestedState (ENestedFunc type)
 

Static Public Member Functions

static CRef< CCmdComposites_AutodefSeqEntry (const objects::CSeq_entry_Handle &seh, const objects::CAutoDefOptions &options)
 
static CRef< CCmdComposites_AutodefSequence (const objects::CSeq_entry_Handle &seh, const objects::CBioseq_Handle &target, const objects::CAutoDefOptions &options)
 
static void s_AutodefBioseqs (const objects::CSeq_entry_Handle &seh, objects::CAutoDefWithTaxonomy &autodef, objects::CAutoDefModifierCombo *mod_combo, CRef< CCmdComposite > composite_cmd)
 
static void s_AutodefSets (const objects::CSeq_entry_Handle &seh, objects::CAutoDefWithTaxonomy &autodef, CRef< CCmdComposite > composite_cmd)
 
static void s_AddAutodefOptions (const objects::CAutoDef &autodef, const objects::CBioseq_Handle &bsh, CRef< CCmdComposite > composite_cmd)
 
static CTempString GetFuncName ()
 
static void s_AutodefBioseqsNoTitle (const objects::CSeq_entry_Handle &seh, objects::CAutoDefWithTaxonomy &autodef, objects::CAutoDefModifierCombo *mod_combo, CRef< CCmdComposite > composite_cmd)
 
static void s_AutodefSetsNoTitle (const objects::CSeq_entry_Handle &seh, objects::CAutoDefWithTaxonomy &autodef, CRef< CCmdComposite > composite_cmd)
 

Protected Member Functions

virtual bool x_ValidArguments () const
 Tests the number and the type of function arguments. More...
 
virtual void x_ResetState ()
 Reset the state of member variables that are set directly/indirectly from function arguments. More...
 
void x_AddModifiersToOptions (objects::CAutoDefOptions &opts)
 
bool x_IsRequested (const objects::CAutoDefAvailableModifier &modifier)
 
string x_GetDescription ()
 
- Protected Member Functions inherited from IEditMacroFunction
 IEditMacroFunction (EScopeEnum func_scope)
 
virtual void x_InitCall (CIRef< IMacroBioDataIter > &data) override
 
virtual void x_SetUserObjects (CQueryParseTree::TNode &qnode) override
 Extracts the function arguments and initializes m_Result member. More...
 
virtual bool x_IsNestedFunctionReturnValid () const
 
void x_AssignReturnValue (const CObjectInfo &oi, const string &field_name)
 Assigns value to m_Result. It is mostly useful for functions used in the WHERE clause. More...
 
void x_AssignReturnValueFromContainer (const CObjectInfo &oi, const string &container, const string &field_name)
 
void x_GetObjectsFromRef (CMQueryNodeValue::TObs &objects, const size_t &index)
 
void x_GetOptionalArgs (string &delimiter, bool &remove_field, size_t &index)
 
void x_LogChangedQuals (const CRef< IFunctionLog > &log)
 
- Protected Member Functions inherited from IMacroFunction< CIRef< IMacroBioDataIter > >
void x_LogFunction (CNcbiOstrstream &logstr)
 
void x_LogError (CNcbiOstrstream &logstr)
 

Protected Attributes

string m_Descr
 
- Protected Attributes inherited from IEditMacroFunction
CIRef< IMacroBioDataIterm_DataIter
 
TNodeValuesVec m_Args
 
CRef< CMQueryNodeValuem_Result
 
Int4 m_QualsChangedCount
 Number of changed qualifiers during the function call. More...
 
string m_FuncName
 Name of the function as it's been used in the script. More...
 
CRef< IFunctionLogm_FuncLog
 
- Protected Attributes inherited from IMacroFunction< CIRef< IMacroBioDataIter > >
CRef< CMacroCmdCompositem_CmdComposite
 
string m_Report
 function activity report More...
 
string m_Error
 error report More...
 
ENestedFunc m_Nested
 flag indicating whether the function is nested within another function More...
 

Additional Inherited Members

- Public Types inherited from IEditMacroFunction
using TParent = IMacroFunction< CIRef< IMacroBioDataIter > >
 
using TNodeValuesVec = vector< CRef< CMQueryNodeValue > >
 
- Public Types inherited from IMacroFunction< CIRef< IMacroBioDataIter > >
enum  EScopeEnum
 
enum  ENestedFunc
 

Detailed Description

Definition at line 96 of file macro_fn_entry.hpp.


The documentation for this class was generated from the following files:
Modified on Fri Feb 23 11:51:05 2024 by modify_doxy.py rev. 669887