AddReference(void) const | CObject | inline |
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive) | CSerialObject | virtual |
CanBeDeleted(void) const THROWS_NONE | CObject | inline |
CDebugDumpable(void) | CDebugDumpable | inline |
CheckReferenceOverflow(TCount count) const | CObject | private |
CheckSelected(E_Choice index) const | CMacro_action_choice_Base | inline |
CMacro_action_choice(void) | CMacro_action_choice | inline |
CMacro_action_choice(const CMacro_action_choice &value) | CMacro_action_choice | private |
CMacro_action_choice_Base(void) | CMacro_action_choice_Base | |
CMacro_action_choice_Base(const CMacro_action_choice_Base &) | CMacro_action_choice_Base | private |
CObject(void) | CObject | |
CObject(const CObject &src) | CObject | |
CSerialObject(void) | CSerialObject | |
DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CSerialObject | virtual |
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DECLARE_INTERNAL_TYPE_INFO() | CMacro_action_choice_Base | |
DeleteThis(void) | CObject | protectedvirtual |
DoDeleteThisObject(void) | CObject | virtual |
DoNotDeleteThisObject(void) | CObject | virtual |
DoSelect(E_Choice index, CObjectMemoryPool *pool=0) | CMacro_action_choice_Base | private |
DumpToConsole(void) const | CDebugDumpable | |
e_Add_feature enum value | CMacro_action_choice_Base | |
e_Add_file_descriptors enum value | CMacro_action_choice_Base | |
e_Add_selenocysteine_except enum value | CMacro_action_choice_Base | |
e_Add_trans_splicing enum value | CMacro_action_choice_Base | |
e_Adjust_features_for_gaps enum value | CMacro_action_choice_Base | |
e_Adjust_for_consensus_splice enum value | CMacro_action_choice_Base | |
e_Aecr enum value | CMacro_action_choice_Base | |
e_Apply_molinfo_block enum value | CMacro_action_choice_Base | |
e_Apply_table enum value | CMacro_action_choice_Base | |
e_Autoapply_structured_comments enum value | CMacro_action_choice_Base | |
e_Autodef enum value | CMacro_action_choice_Base | |
E_Choice enum name | CMacro_action_choice_Base | |
E_ChoiceStopper enum name | CMacro_action_choice_Base | |
e_Convert_feature enum value | CMacro_action_choice_Base | |
e_Create_tsa_ids enum value | CMacro_action_choice_Base | |
e_Edit_location enum value | CMacro_action_choice_Base | |
e_Fix_author enum value | CMacro_action_choice_Base | |
e_Fix_caps enum value | CMacro_action_choice_Base | |
e_Fix_format enum value | CMacro_action_choice_Base | |
e_Fix_pub_caps enum value | CMacro_action_choice_Base | |
e_Fix_sets enum value | CMacro_action_choice_Base | |
e_Fix_spell enum value | CMacro_action_choice_Base | |
e_Fix_usa_and_states enum value | CMacro_action_choice_Base | |
e_Instantiate_protein_titles enum value | CMacro_action_choice_Base | |
e_Join_short_trnas enum value | CMacro_action_choice_Base | |
e_Lookup_pubs enum value | CMacro_action_choice_Base | |
e_Lookup_taxonomy enum value | CMacro_action_choice_Base | |
e_Make_bold_xrefs enum value | CMacro_action_choice_Base | |
e_Make_gene_xrefs enum value | CMacro_action_choice_Base | |
e_MaxChoice enum value | CMacro_action_choice_Base | |
e_not_set enum value | CMacro_action_choice_Base | |
e_Parse enum value | CMacro_action_choice_Base | |
e_Perform_autofix enum value | CMacro_action_choice_Base | |
e_Propagate_missing_old_name enum value | CMacro_action_choice_Base | |
e_Propagate_sequence_technology enum value | CMacro_action_choice_Base | |
e_Remove_descriptor enum value | CMacro_action_choice_Base | |
e_Remove_duplicate_features enum value | CMacro_action_choice_Base | |
e_Remove_duplicate_structured_comments enum value | CMacro_action_choice_Base | |
e_Remove_feature enum value | CMacro_action_choice_Base | |
e_Remove_invalid_ecnumbers enum value | CMacro_action_choice_Base | |
e_Remove_lineage_notes enum value | CMacro_action_choice_Base | |
e_Remove_seg_gaps enum value | CMacro_action_choice_Base | |
e_Remove_sequences enum value | CMacro_action_choice_Base | |
e_Remove_xrefs enum value | CMacro_action_choice_Base | |
e_Removesets enum value | CMacro_action_choice_Base | |
e_Reorder_structured_comments enum value | CMacro_action_choice_Base | |
e_Retranslate_cds enum value | CMacro_action_choice_Base | |
e_Sort_fields enum value | CMacro_action_choice_Base | |
e_Synchronize_cds_partials enum value | CMacro_action_choice_Base | |
e_Trim_junk_from_primer_seq enum value | CMacro_action_choice_Base | |
e_Trim_stop_from_complete_cds enum value | CMacro_action_choice_Base | |
e_Trim_terminal_ns enum value | CMacro_action_choice_Base | |
e_Update_replaced_ecnumbers enum value | CMacro_action_choice_Base | |
e_Update_sequences enum value | CMacro_action_choice_Base | |
EAllocFillMode enum name | CObject | |
eAllocFillNone enum value | CObject | |
eAllocFillPattern enum value | CObject | |
eAllocFillZero enum value | CObject | |
eCounterBitsCanBeDeleted | CObject | static |
eCounterBitsInPlainHeap | CObject | static |
eCounterBitsPlaceMask | CObject | static |
eCounterStateMask | CObject | static |
eCounterStep | CObject | static |
eCounterValid | CObject | static |
EnableDebugDump(bool on) | CDebugDumpable | static |
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const | CSerialObject | virtual |
GetAdd_feature(void) const | CMacro_action_choice_Base | |
GetAdd_file_descriptors(void) const | CMacro_action_choice_Base | |
GetAdjust_features_for_gaps(void) const | CMacro_action_choice_Base | |
GetAecr(void) const | CMacro_action_choice_Base | |
GetAllocFillMode(void) | CObject | static |
GetApply_molinfo_block(void) const | CMacro_action_choice_Base | |
GetApply_table(void) const | CMacro_action_choice_Base | |
GetAutodef(void) const | CMacro_action_choice_Base | |
GetConvert_feature(void) const | CMacro_action_choice_Base | |
GetCreate_tsa_ids(void) const | CMacro_action_choice_Base | |
GetEdit_location(void) const | CMacro_action_choice_Base | |
GetFix_author(void) const | CMacro_action_choice_Base | |
GetFix_caps(void) const | CMacro_action_choice_Base | |
GetFix_format(void) const | CMacro_action_choice_Base | |
GetFix_pub_caps(void) const | CMacro_action_choice_Base | |
GetFix_sets(void) const | CMacro_action_choice_Base | |
GetMake_gene_xrefs(void) const | CMacro_action_choice_Base | |
GetNamespaceName(void) const | CSerialObject | |
GetNamespacePrefix(void) const | CSerialObject | |
GetParse(void) const | CMacro_action_choice_Base | |
GetPerform_autofix(void) const | CMacro_action_choice_Base | |
GetRemove_descriptor(void) const | CMacro_action_choice_Base | |
GetRemove_duplicate_features(void) const | CMacro_action_choice_Base | |
GetRemove_feature(void) const | CMacro_action_choice_Base | |
GetRemove_sequences(void) const | CMacro_action_choice_Base | |
GetRemove_xrefs(void) const | CMacro_action_choice_Base | |
GetRetranslate_cds(void) const | CMacro_action_choice_Base | |
GetSort_fields(void) const | CMacro_action_choice_Base | |
GetThisTypeInfo(void) const =0 | CSerialObject | pure virtual |
GetUpdate_replaced_ecnumbers(void) const | CMacro_action_choice_Base | |
GetUpdate_sequences(void) const | CMacro_action_choice_Base | |
HasNamespaceName(void) const | CSerialObject | |
HasNamespacePrefix(void) const | CSerialObject | |
InitCounter(void) | CObject | inlineprivate |
InvalidObject(void) const | CObject | private |
IsAdd_feature(void) const | CMacro_action_choice_Base | inline |
IsAdd_file_descriptors(void) const | CMacro_action_choice_Base | inline |
IsAdd_selenocysteine_except(void) const | CMacro_action_choice_Base | inline |
IsAdd_trans_splicing(void) const | CMacro_action_choice_Base | inline |
IsAdjust_features_for_gaps(void) const | CMacro_action_choice_Base | inline |
IsAdjust_for_consensus_splice(void) const | CMacro_action_choice_Base | inline |
IsAecr(void) const | CMacro_action_choice_Base | inline |
IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
IsApply_molinfo_block(void) const | CMacro_action_choice_Base | inline |
IsApply_table(void) const | CMacro_action_choice_Base | inline |
IsAutoapply_structured_comments(void) const | CMacro_action_choice_Base | inline |
IsAutodef(void) const | CMacro_action_choice_Base | inline |
IsConvert_feature(void) const | CMacro_action_choice_Base | inline |
IsCreate_tsa_ids(void) const | CMacro_action_choice_Base | inline |
IsEdit_location(void) const | CMacro_action_choice_Base | inline |
IsFix_author(void) const | CMacro_action_choice_Base | inline |
IsFix_caps(void) const | CMacro_action_choice_Base | inline |
IsFix_format(void) const | CMacro_action_choice_Base | inline |
IsFix_pub_caps(void) const | CMacro_action_choice_Base | inline |
IsFix_sets(void) const | CMacro_action_choice_Base | inline |
IsFix_spell(void) const | CMacro_action_choice_Base | inline |
IsFix_usa_and_states(void) const | CMacro_action_choice_Base | inline |
IsInstantiate_protein_titles(void) const | CMacro_action_choice_Base | inline |
IsJoin_short_trnas(void) const | CMacro_action_choice_Base | inline |
IsLookup_pubs(void) const | CMacro_action_choice_Base | inline |
IsLookup_taxonomy(void) const | CMacro_action_choice_Base | inline |
IsMake_bold_xrefs(void) const | CMacro_action_choice_Base | inline |
IsMake_gene_xrefs(void) const | CMacro_action_choice_Base | inline |
IsParse(void) const | CMacro_action_choice_Base | inline |
IsPerform_autofix(void) const | CMacro_action_choice_Base | inline |
IsPropagate_missing_old_name(void) const | CMacro_action_choice_Base | inline |
IsPropagate_sequence_technology(void) const | CMacro_action_choice_Base | inline |
IsRemove_descriptor(void) const | CMacro_action_choice_Base | inline |
IsRemove_duplicate_features(void) const | CMacro_action_choice_Base | inline |
IsRemove_duplicate_structured_comments(void) const | CMacro_action_choice_Base | inline |
IsRemove_feature(void) const | CMacro_action_choice_Base | inline |
IsRemove_invalid_ecnumbers(void) const | CMacro_action_choice_Base | inline |
IsRemove_lineage_notes(void) const | CMacro_action_choice_Base | inline |
IsRemove_seg_gaps(void) const | CMacro_action_choice_Base | inline |
IsRemove_sequences(void) const | CMacro_action_choice_Base | inline |
IsRemove_xrefs(void) const | CMacro_action_choice_Base | inline |
IsRemovesets(void) const | CMacro_action_choice_Base | inline |
IsReorder_structured_comments(void) const | CMacro_action_choice_Base | inline |
IsRetranslate_cds(void) const | CMacro_action_choice_Base | inline |
IsSort_fields(void) const | CMacro_action_choice_Base | inline |
IsSynchronize_cds_partials(void) const | CMacro_action_choice_Base | inline |
IsTrim_junk_from_primer_seq(void) const | CMacro_action_choice_Base | inline |
IsTrim_stop_from_complete_cds(void) const | CMacro_action_choice_Base | inline |
IsTrim_terminal_ns(void) const | CMacro_action_choice_Base | inline |
IsUpdate_replaced_ecnumbers(void) const | CMacro_action_choice_Base | inline |
IsUpdate_sequences(void) const | CMacro_action_choice_Base | inline |
m_choice | CMacro_action_choice_Base | private |
m_Counter | CObject | mutableprivate |
m_object | CMacro_action_choice_Base | |
ms_UnassignedByte | CSerialObject | static |
ms_UnassignedStr | CSerialObject | static |
ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
operator delete(void *ptr) | CObject | |
operator delete(void *ptr, void *place) | CObject | |
operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
operator delete[](void *ptr) | CObject | |
operator new(size_t size) | CObject | |
operator new(size_t size, void *place) | CObject | |
operator new(size_t size, CObjectMemoryPool *place) | CObject | |
operator new[](size_t size) | CObject | |
operator=(const CMacro_action_choice &value) | CMacro_action_choice | private |
CSerialObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
Referenced(void) const THROWS_NONE | CObject | inline |
ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
ReleaseReference(void) const | CObject | |
RemoveLastReference(TCount count) const | CObject | private |
RemoveReference(void) const | CObject | inline |
Reset(void) | CMacro_action_choice_Base | virtual |
ResetSelection(void) | CMacro_action_choice_Base | virtual |
Select(E_Choice index, EResetVariant reset=eDoResetVariant) | CMacro_action_choice_Base | |
Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool) | CMacro_action_choice_Base | |
SelectionName(E_Choice index) | CMacro_action_choice_Base | static |
SetAdd_feature(void) | CMacro_action_choice_Base | |
SetAdd_feature(TAdd_feature &value) | CMacro_action_choice_Base | |
SetAdd_file_descriptors(void) | CMacro_action_choice_Base | |
SetAdd_file_descriptors(TAdd_file_descriptors &value) | CMacro_action_choice_Base | |
SetAdd_selenocysteine_except(void) | CMacro_action_choice_Base | inline |
SetAdd_trans_splicing(void) | CMacro_action_choice_Base | inline |
SetAdjust_features_for_gaps(void) | CMacro_action_choice_Base | |
SetAdjust_features_for_gaps(TAdjust_features_for_gaps &value) | CMacro_action_choice_Base | |
SetAdjust_for_consensus_splice(void) | CMacro_action_choice_Base | inline |
SetAecr(void) | CMacro_action_choice_Base | |
SetAecr(TAecr &value) | CMacro_action_choice_Base | |
SetAllocFillMode(EAllocFillMode mode) | CObject | static |
SetAllocFillMode(const string &value) | CObject | static |
SetApply_molinfo_block(void) | CMacro_action_choice_Base | |
SetApply_molinfo_block(TApply_molinfo_block &value) | CMacro_action_choice_Base | |
SetApply_table(void) | CMacro_action_choice_Base | |
SetApply_table(TApply_table &value) | CMacro_action_choice_Base | |
SetAutoapply_structured_comments(void) | CMacro_action_choice_Base | inline |
SetAutodef(void) | CMacro_action_choice_Base | |
SetAutodef(TAutodef &value) | CMacro_action_choice_Base | |
SetConvert_feature(void) | CMacro_action_choice_Base | |
SetConvert_feature(TConvert_feature &value) | CMacro_action_choice_Base | |
SetCreate_tsa_ids(void) | CMacro_action_choice_Base | |
SetCreate_tsa_ids(TCreate_tsa_ids &value) | CMacro_action_choice_Base | |
SetEdit_location(void) | CMacro_action_choice_Base | |
SetEdit_location(TEdit_location &value) | CMacro_action_choice_Base | |
SetFix_author(void) | CMacro_action_choice_Base | |
SetFix_author(TFix_author &value) | CMacro_action_choice_Base | |
SetFix_caps(void) | CMacro_action_choice_Base | |
SetFix_caps(TFix_caps &value) | CMacro_action_choice_Base | |
SetFix_format(void) | CMacro_action_choice_Base | |
SetFix_format(TFix_format &value) | CMacro_action_choice_Base | |
SetFix_pub_caps(void) | CMacro_action_choice_Base | |
SetFix_pub_caps(TFix_pub_caps &value) | CMacro_action_choice_Base | |
SetFix_sets(void) | CMacro_action_choice_Base | |
SetFix_sets(TFix_sets &value) | CMacro_action_choice_Base | |
SetFix_spell(void) | CMacro_action_choice_Base | inline |
SetFix_usa_and_states(void) | CMacro_action_choice_Base | inline |
SetInstantiate_protein_titles(void) | CMacro_action_choice_Base | inline |
SetJoin_short_trnas(void) | CMacro_action_choice_Base | inline |
SetLookup_pubs(void) | CMacro_action_choice_Base | inline |
SetLookup_taxonomy(void) | CMacro_action_choice_Base | inline |
SetMake_bold_xrefs(void) | CMacro_action_choice_Base | inline |
SetMake_gene_xrefs(void) | CMacro_action_choice_Base | |
SetMake_gene_xrefs(TMake_gene_xrefs &value) | CMacro_action_choice_Base | |
SetParse(void) | CMacro_action_choice_Base | |
SetParse(TParse &value) | CMacro_action_choice_Base | |
SetPerform_autofix(void) | CMacro_action_choice_Base | |
SetPerform_autofix(TPerform_autofix &value) | CMacro_action_choice_Base | |
SetPropagate_missing_old_name(void) | CMacro_action_choice_Base | inline |
SetPropagate_sequence_technology(void) | CMacro_action_choice_Base | inline |
SetRemove_descriptor(void) | CMacro_action_choice_Base | |
SetRemove_descriptor(TRemove_descriptor &value) | CMacro_action_choice_Base | |
SetRemove_duplicate_features(void) | CMacro_action_choice_Base | |
SetRemove_duplicate_features(TRemove_duplicate_features &value) | CMacro_action_choice_Base | |
SetRemove_duplicate_structured_comments(void) | CMacro_action_choice_Base | inline |
SetRemove_feature(void) | CMacro_action_choice_Base | |
SetRemove_feature(TRemove_feature &value) | CMacro_action_choice_Base | |
SetRemove_invalid_ecnumbers(void) | CMacro_action_choice_Base | inline |
SetRemove_lineage_notes(void) | CMacro_action_choice_Base | inline |
SetRemove_seg_gaps(void) | CMacro_action_choice_Base | inline |
SetRemove_sequences(void) | CMacro_action_choice_Base | |
SetRemove_sequences(TRemove_sequences &value) | CMacro_action_choice_Base | |
SetRemove_xrefs(void) | CMacro_action_choice_Base | |
SetRemove_xrefs(TRemove_xrefs &value) | CMacro_action_choice_Base | |
SetRemovesets(void) | CMacro_action_choice_Base | inline |
SetReorder_structured_comments(void) | CMacro_action_choice_Base | inline |
SetRetranslate_cds(void) | CMacro_action_choice_Base | |
SetRetranslate_cds(TRetranslate_cds &value) | CMacro_action_choice_Base | |
SetSort_fields(void) | CMacro_action_choice_Base | |
SetSort_fields(TSort_fields &value) | CMacro_action_choice_Base | |
SetSynchronize_cds_partials(void) | CMacro_action_choice_Base | inline |
SetTrim_junk_from_primer_seq(void) | CMacro_action_choice_Base | inline |
SetTrim_stop_from_complete_cds(void) | CMacro_action_choice_Base | inline |
SetTrim_terminal_ns(void) | CMacro_action_choice_Base | inline |
SetUpdate_replaced_ecnumbers(void) | CMacro_action_choice_Base | |
SetUpdate_replaced_ecnumbers(TUpdate_replaced_ecnumbers &value) | CMacro_action_choice_Base | |
SetUpdate_sequences(void) | CMacro_action_choice_Base | |
SetUpdate_sequences(TUpdate_sequences &value) | CMacro_action_choice_Base | |
SetVerifyDataGlobal(ESerialVerifyData verify) | CSerialObject | static |
SetVerifyDataThread(ESerialVerifyData verify) | CSerialObject | static |
sm_DumpEnabled | CDebugDumpable | privatestatic |
sm_SelectionNames | CMacro_action_choice_Base | privatestatic |
TAdd_feature typedef | CMacro_action_choice_Base | |
TAdd_file_descriptors typedef | CMacro_action_choice_Base | |
TAdjust_features_for_gaps typedef | CMacro_action_choice_Base | |
TAecr typedef | CMacro_action_choice_Base | |
TApply_molinfo_block typedef | CMacro_action_choice_Base | |
TApply_table typedef | CMacro_action_choice_Base | |
TAutodef typedef | CMacro_action_choice_Base | |
TConvert_feature typedef | CMacro_action_choice_Base | |
TCount typedef | CObject | |
TCounter typedef | CObject | |
TCreate_tsa_ids typedef | CMacro_action_choice_Base | |
TEdit_location typedef | CMacro_action_choice_Base | |
TFix_author typedef | CMacro_action_choice_Base | |
TFix_caps typedef | CMacro_action_choice_Base | |
TFix_format typedef | CMacro_action_choice_Base | |
TFix_pub_caps typedef | CMacro_action_choice_Base | |
TFix_sets typedef | CMacro_action_choice_Base | |
ThrowInvalidSelection(E_Choice index) const | CMacro_action_choice_Base | |
ThrowNullPointerException(void) | CObject | static |
ThrowNullPointerException(const type_info &type) | CObject | static |
ThrowUnassigned(TMemberIndex index) const | CSerialObject | |
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) const | CSerialObject | |
TLockerType typedef | CObject | |
TMake_gene_xrefs typedef | CMacro_action_choice_Base | |
Tparent typedef | CMacro_action_choice | private |
TParse typedef | CMacro_action_choice_Base | |
TPerform_autofix typedef | CMacro_action_choice_Base | |
TRemove_descriptor typedef | CMacro_action_choice_Base | |
TRemove_duplicate_features typedef | CMacro_action_choice_Base | |
TRemove_feature typedef | CMacro_action_choice_Base | |
TRemove_sequences typedef | CMacro_action_choice_Base | |
TRemove_xrefs typedef | CMacro_action_choice_Base | |
TRetranslate_cds typedef | CMacro_action_choice_Base | |
TSort_fields typedef | CMacro_action_choice_Base | |
TUpdate_replaced_ecnumbers typedef | CMacro_action_choice_Base | |
TUpdate_sequences typedef | CMacro_action_choice_Base | |
UnassignedByte(void) | CSerialObject | inlinestatic |
UnassignedString(void) | CSerialObject | inlinestatic |
UnassignedStringUTF8(void) | CSerialObject | inlinestatic |
Which(void) const | CMacro_action_choice_Base | inline |
x_GetVerifyData(void) | CSerialObject | privatestatic |
~CDebugDumpable(void) | CDebugDumpable | virtual |
~CMacro_action_choice(void) | CMacro_action_choice | |
~CMacro_action_choice_Base(void) | CMacro_action_choice_Base | virtual |
~CObject(void) | CObject | virtual |
~CSerialObject(void) | CSerialObject | virtual |