CMakeDbPosMatrix Class Reference

Search Toolkit Book for CMakeDbPosMatrix

Public Member Functions
	CMakeDbPosMatrix ()
	~CMakeDbPosMatrix ()
void	Create (int seq_size)
void	Delete (void)
Int4 **	Get (void)
unsigned int	GetSize (void)

Private Attributes
Int4 **	m_posMatrix
int	m_size

Detailed Description

Definition at line 126 of file makeprofiledb.cpp.

Constructor & Destructor Documentation

CMakeDbPosMatrix()

CMakeDbPosMatrix::CMakeDbPosMatrix ( )

inline

Definition at line 129 of file makeprofiledb.cpp.

~CMakeDbPosMatrix()

CMakeDbPosMatrix::~CMakeDbPosMatrix ( )

inline

Definition at line 130 of file makeprofiledb.cpp.

References Delete().

Member Function Documentation

Create()

void CMakeDbPosMatrix::Create

(

int

seq_size

)

Definition at line 144 of file makeprofiledb.cpp.

References BLASTAA_SIZE, Delete(), i, m_posMatrix, m_size, and ncbi::grid::netcache::search::fields::size.

Referenced by CMakeProfileDBApp::x_RPSUpdatePSSM().

Delete()

void CMakeDbPosMatrix::Delete

(

void

)

Definition at line 159 of file makeprofiledb.cpp.

References i, m_posMatrix, m_size, and NULL.

Referenced by Create(), CMakeProfileDBApp::x_MakeVol(), and ~CMakeDbPosMatrix().

Get()

Int4** CMakeDbPosMatrix::Get ( void  )

inline

Definition at line 135 of file makeprofiledb.cpp.

References m_posMatrix.

Referenced by CMakeProfileDBApp::x_RPSUpdateLookup(), and CMakeProfileDBApp::x_RPSUpdatePSSM().

GetSize()

unsigned int CMakeDbPosMatrix::GetSize ( void  )

inline

Definition at line 136 of file makeprofiledb.cpp.

References m_size.

Member Data Documentation

m_posMatrix

Int4** CMakeDbPosMatrix::m_posMatrix

private

Definition at line 140 of file makeprofiledb.cpp.

Referenced by Create(), Delete(), and Get().

m_size

int CMakeDbPosMatrix::m_size

private

Definition at line 141 of file makeprofiledb.cpp.

Referenced by Create(), Delete(), and GetSize().

---

The documentation for this class was generated from the following file:

• src/app/blastdb/makeprofiledb.cpp