Search Toolkit Book for CModification_info_Base::C_Attlist

#include <algo/ms/formats/pepxml/Modification_info_.hpp>

Inheritance diagram for CModification_info_Base::C_Attlist:

Collaboration diagram for CModification_info_Base::C_Attlist:

Public Types
enum class	E_memberIndex { e__allMandatory = 0 , e_mod_nterm_mass , e_mod_cterm_mass , e_modified_peptide }

typedef double	TMod_nterm_mass

typedef double	TMod_cterm_mass

typedef string	TModified_peptide

typedef Tparent::CMemberIndex< E_memberIndex, 4 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	C_Attlist (void)

	~C_Attlist (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetMod_nterm_mass (void) const
	Check if a value has been assigned to Mod_nterm_mass data member. More...

bool	CanGetMod_nterm_mass (void) const
	Check if it is safe to call GetMod_nterm_mass method. More...

void	ResetMod_nterm_mass (void)
	Reset Mod_nterm_mass data member. More...

TMod_nterm_mass	GetMod_nterm_mass (void) const
	Get the Mod_nterm_mass member data. More...

void	SetMod_nterm_mass (TMod_nterm_mass value)
	Assign a value to Mod_nterm_mass data member. More...

TMod_nterm_mass &	SetMod_nterm_mass (void)
	Assign a value to Mod_nterm_mass data member. More...

bool	IsSetMod_cterm_mass (void) const
	Check if a value has been assigned to Mod_cterm_mass data member. More...

bool	CanGetMod_cterm_mass (void) const
	Check if it is safe to call GetMod_cterm_mass method. More...

void	ResetMod_cterm_mass (void)
	Reset Mod_cterm_mass data member. More...

TMod_cterm_mass	GetMod_cterm_mass (void) const
	Get the Mod_cterm_mass member data. More...

void	SetMod_cterm_mass (TMod_cterm_mass value)
	Assign a value to Mod_cterm_mass data member. More...

TMod_cterm_mass &	SetMod_cterm_mass (void)
	Assign a value to Mod_cterm_mass data member. More...

bool	IsSetModified_peptide (void) const
	Check if a value has been assigned to Modified_peptide data member. More...

bool	CanGetModified_peptide (void) const
	Check if it is safe to call GetModified_peptide method. More...

void	ResetModified_peptide (void)
	Reset Modified_peptide data member. More...

const TModified_peptide &	GetModified_peptide (void) const
	Get the Modified_peptide member data. More...

void	SetModified_peptide (const TModified_peptide &value)
	Assign a value to Modified_peptide data member. More...

void	SetModified_peptide (TModified_peptide &&value)

TModified_peptide &	SetModified_peptide (void)
	Assign a value to Modified_peptide data member. More...

void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Private Types
typedef CSerialObject	Tparent

Private Member Functions
	C_Attlist (const C_Attlist &)

C_Attlist &	operator= (const C_Attlist &)

Private Attributes
Uint4	m_set_State [1]

double	m_Mod_nterm_mass

double	m_Mod_cterm_mass

string	m_Modified_peptide

Additional Inherited Members
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

C_Attlist –.

Definition at line 95 of file Modification_info_.hpp.

The documentation for this class was generated from the following files:

include/algo/ms/formats/pepxml/Modification_info_.hpp
src/algo/ms/formats/pepxml/Modification_info_.cpp

Public Types

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description