Represents ASN.1 type MolInfo defined in file seq.asn

#include <objects/seq/MolInfo.hpp>

Inheritance diagram for CMolInfo:

Collaboration diagram for CMolInfo:

Public Member Functions
	CMolInfo (void)

	~CMolInfo (void)

void	GetLabel (string *label) const

Public Member Functions inherited from CMolInfo_Base
	CMolInfo_Base (void)

virtual	~CMolInfo_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetBiomol (void) const
	Check if a value has been assigned to Biomol data member. More...

bool	CanGetBiomol (void) const
	Check if it is safe to call GetBiomol method. More...

void	ResetBiomol (void)
	Reset Biomol data member. More...

void	SetDefaultBiomol (void)
	Assign default value to Biomol data member. More...

TBiomol	GetBiomol (void) const
	Get the Biomol member data. More...

void	SetBiomol (TBiomol value)
	Assign a value to Biomol data member. More...

TBiomol &	SetBiomol (void)
	Assign a value to Biomol data member. More...

bool	IsSetTech (void) const
	Check if a value has been assigned to Tech data member. More...

bool	CanGetTech (void) const
	Check if it is safe to call GetTech method. More...

void	ResetTech (void)
	Reset Tech data member. More...

void	SetDefaultTech (void)
	Assign default value to Tech data member. More...

TTech	GetTech (void) const
	Get the Tech member data. More...

void	SetTech (TTech value)
	Assign a value to Tech data member. More...

TTech &	SetTech (void)
	Assign a value to Tech data member. More...

bool	IsSetTechexp (void) const
	explanation if tech not enough More...

bool	CanGetTechexp (void) const
	Check if it is safe to call GetTechexp method. More...

void	ResetTechexp (void)
	Reset Techexp data member. More...

const TTechexp &	GetTechexp (void) const
	Get the Techexp member data. More...

void	SetTechexp (const TTechexp &value)
	Assign a value to Techexp data member. More...

void	SetTechexp (TTechexp &&value)

TTechexp &	SetTechexp (void)
	Assign a value to Techexp data member. More...

bool	IsSetCompleteness (void) const
	Check if a value has been assigned to Completeness data member. More...

bool	CanGetCompleteness (void) const
	Check if it is safe to call GetCompleteness method. More...

void	ResetCompleteness (void)
	Reset Completeness data member. More...

void	SetDefaultCompleteness (void)
	Assign default value to Completeness data member. More...

TCompleteness	GetCompleteness (void) const
	Get the Completeness member data. More...

void	SetCompleteness (TCompleteness value)
	Assign a value to Completeness data member. More...

TCompleteness &	SetCompleteness (void)
	Assign a value to Completeness data member. More...

bool	IsSetGbmoltype (void) const
	identifies particular ncRNA Check if a value has been assigned to Gbmoltype data member. More...

bool	CanGetGbmoltype (void) const
	Check if it is safe to call GetGbmoltype method. More...

void	ResetGbmoltype (void)
	Reset Gbmoltype data member. More...

const TGbmoltype &	GetGbmoltype (void) const
	Get the Gbmoltype member data. More...

void	SetGbmoltype (const TGbmoltype &value)
	Assign a value to Gbmoltype data member. More...

void	SetGbmoltype (TGbmoltype &&value)

TGbmoltype &	SetGbmoltype (void)
	Assign a value to Gbmoltype data member. More...

virtual void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Member Functions
static string	GetBiomolName (CMolInfo::TBiomol biomol)

Static Public Member Functions inherited from CMolInfo_Base
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	EBiomol (void)
	Access to EBiomol's attributes (values, names) as defined in spec. More...

static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	ETech (void)
	Access to ETech's attributes (values, names) as defined in spec. More...

static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	ECompleteness (void)
	Access to ECompleteness's attributes (values, names) as defined in spec. More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CMolInfo_Base	Tparent

Private Member Functions
	CMolInfo (const CMolInfo &value)

CMolInfo &	operator= (const CMolInfo &value)

Additional Inherited Members
Public Types inherited from CMolInfo_Base
enum	EBiomol { eBiomol_unknown = 0 , eBiomol_genomic = 1 , eBiomol_pre_RNA = 2 , eBiomol_mRNA = 3 , eBiomol_rRNA = 4 , eBiomol_tRNA = 5 , eBiomol_snRNA = 6 , eBiomol_scRNA = 7 , eBiomol_peptide = 8 , eBiomol_other_genetic = 9 , eBiomol_genomic_mRNA = 10 , eBiomol_cRNA = 11 , eBiomol_snoRNA = 12 , eBiomol_transcribed_RNA = 13 , eBiomol_ncRNA = 14 , eBiomol_tmRNA = 15 , eBiomol_other = 255 }

enum	ETech { eTech_unknown = 0 , eTech_standard = 1 , eTech_est = 2 , eTech_sts = 3 , eTech_survey = 4 , eTech_genemap = 5 , eTech_physmap = 6 , eTech_derived = 7 , eTech_concept_trans = 8 , eTech_seq_pept = 9 , eTech_both = 10 , eTech_seq_pept_overlap = 11 , eTech_seq_pept_homol = 12 , eTech_concept_trans_a = 13 , eTech_htgs_1 = 14 , eTech_htgs_2 = 15 , eTech_htgs_3 = 16 , eTech_fli_cdna = 17 , eTech_htgs_0 = 18 , eTech_htc = 19 , eTech_wgs = 20 , eTech_barcode = 21 , eTech_composite_wgs_htgs = 22 , eTech_tsa = 23 , eTech_targeted = 24 , eTech_other = 255 }

enum	ECompleteness { eCompleteness_unknown = 0 , eCompleteness_complete = 1 , eCompleteness_partial = 2 , eCompleteness_no_left = 3 , eCompleteness_no_right = 4 , eCompleteness_no_ends = 5 , eCompleteness_has_left = 6 , eCompleteness_has_right = 7 , eCompleteness_other = 255 }

enum class	E_memberIndex { e__allMandatory = 0 , e_biomol , e_tech , e_techexp , e_completeness , e_gbmoltype }

typedef int	TBiomol

typedef int	TTech

typedef string	TTechexp

typedef int	TCompleteness

typedef string	TGbmoltype

typedef Tparent::CMemberIndex< E_memberIndex, 6 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 50 of file MolInfo.hpp.

Member Typedef Documentation

◆ Tparent

typedef CMolInfo_Base CMolInfo::Tparent

private

Definition at line 52 of file MolInfo.hpp.

Constructor & Destructor Documentation

◆ CMolInfo() [1/2]

CMolInfo::CMolInfo ( void )

inline

Definition at line 77 of file MolInfo.hpp.

◆ ~CMolInfo()

CMolInfo::~CMolInfo ( void )

Definition at line 52 of file MolInfo.cpp.

◆ CMolInfo() [2/2]

CMolInfo::CMolInfo ( const CMolInfo & value )

private

Member Function Documentation

◆ GetBiomolName()

string CMolInfo::GetBiomolName ( CMolInfo::TBiomol biomol )

static

Definition at line 116 of file MolInfo.cpp.

Referenced by CAutoDef::x_GetOneNonFeatureClause().

◆ GetLabel()

void CMolInfo::GetLabel ( string * label ) const

Definition at line 56 of file MolInfo.cpp.

References CEnumeratedTypeValues::FindName(), CMolInfo_Base::GetBiomol(), CMolInfo_Base::GetCompleteness(), CMolInfo_Base::GetTech(), CMolInfo_Base::GetTechexp(), CMolInfo_Base::IsSetBiomol(), CMolInfo_Base::IsSetCompleteness(), CMolInfo_Base::IsSetTech(), CMolInfo_Base::IsSetTechexp(), and label.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), and s_GetContentLabel().

◆ operator=()

CMolInfo& CMolInfo::operator= ( const CMolInfo & value )

private

The documentation for this class was generated from the following files:

include/objects/seq/MolInfo.hpp
src/objects/seq/MolInfo.cpp

Public Member Functions

Static Public Member Functions

Private Types

Private Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ Tparent

Constructor & Destructor Documentation

◆ CMolInfo() [1/2]

◆ ~CMolInfo()

◆ CMolInfo() [2/2]

Member Function Documentation

◆ GetBiomolName()

◆ GetLabel()

◆ operator=()