NCBI C++ ToolKit
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Search Toolkit Book for CMolInfo_Base
******* NOTE: * mol-type, modif, method, and org are consolidated and expanded * in Org-ref, BioSource, and MolInfo in this specification. More...
#include <objects/seq/MolInfo_.hpp>
Public Member Functions | |
CMolInfo_Base (void) | |
virtual | ~CMolInfo_Base (void) |
DECLARE_INTERNAL_TYPE_INFO () | |
bool | IsSetBiomol (void) const |
Check if a value has been assigned to Biomol data member. More... | |
bool | CanGetBiomol (void) const |
Check if it is safe to call GetBiomol method. More... | |
void | ResetBiomol (void) |
Reset Biomol data member. More... | |
void | SetDefaultBiomol (void) |
Assign default value to Biomol data member. More... | |
TBiomol | GetBiomol (void) const |
Get the Biomol member data. More... | |
void | SetBiomol (TBiomol value) |
Assign a value to Biomol data member. More... | |
TBiomol & | SetBiomol (void) |
Assign a value to Biomol data member. More... | |
bool | IsSetTech (void) const |
Check if a value has been assigned to Tech data member. More... | |
bool | CanGetTech (void) const |
Check if it is safe to call GetTech method. More... | |
void | ResetTech (void) |
Reset Tech data member. More... | |
void | SetDefaultTech (void) |
Assign default value to Tech data member. More... | |
TTech | GetTech (void) const |
Get the Tech member data. More... | |
void | SetTech (TTech value) |
Assign a value to Tech data member. More... | |
TTech & | SetTech (void) |
Assign a value to Tech data member. More... | |
bool | IsSetTechexp (void) const |
explanation if tech not enough More... | |
bool | CanGetTechexp (void) const |
Check if it is safe to call GetTechexp method. More... | |
void | ResetTechexp (void) |
Reset Techexp data member. More... | |
const TTechexp & | GetTechexp (void) const |
Get the Techexp member data. More... | |
void | SetTechexp (const TTechexp &value) |
Assign a value to Techexp data member. More... | |
void | SetTechexp (TTechexp &&value) |
TTechexp & | SetTechexp (void) |
Assign a value to Techexp data member. More... | |
bool | IsSetCompleteness (void) const |
Check if a value has been assigned to Completeness data member. More... | |
bool | CanGetCompleteness (void) const |
Check if it is safe to call GetCompleteness method. More... | |
void | ResetCompleteness (void) |
Reset Completeness data member. More... | |
void | SetDefaultCompleteness (void) |
Assign default value to Completeness data member. More... | |
TCompleteness | GetCompleteness (void) const |
Get the Completeness member data. More... | |
void | SetCompleteness (TCompleteness value) |
Assign a value to Completeness data member. More... | |
TCompleteness & | SetCompleteness (void) |
Assign a value to Completeness data member. More... | |
bool | IsSetGbmoltype (void) const |
identifies particular ncRNA Check if a value has been assigned to Gbmoltype data member. More... | |
bool | CanGetGbmoltype (void) const |
Check if it is safe to call GetGbmoltype method. More... | |
void | ResetGbmoltype (void) |
Reset Gbmoltype data member. More... | |
const TGbmoltype & | GetGbmoltype (void) const |
Get the Gbmoltype member data. More... | |
void | SetGbmoltype (const TGbmoltype &value) |
Assign a value to Gbmoltype data member. More... | |
void | SetGbmoltype (TGbmoltype &&value) |
TGbmoltype & | SetGbmoltype (void) |
Assign a value to Gbmoltype data member. More... | |
virtual void | Reset (void) |
Reset the whole object. More... | |
Public Member Functions inherited from CSerialObject | |
CSerialObject (void) | |
virtual | ~CSerialObject (void) |
virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
Set object to copy of another one. More... | |
virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
Check if both objects contain the same values. More... | |
virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
Define method for dumping debug information. More... | |
void | ThrowUnassigned (TMemberIndex index) const |
void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
bool | HasNamespaceName (void) const |
Check if object data type has namespace name. More... | |
const string & | GetNamespaceName (void) const |
Get namespace name. More... | |
bool | HasNamespacePrefix (void) const |
Check if data type has namespace prefix. More... | |
const string & | GetNamespacePrefix (void) const |
Get namespace prefix. More... | |
Public Member Functions inherited from CObject | |
CObject (void) | |
Constructor. More... | |
CObject (const CObject &src) | |
Copy constructor. More... | |
virtual | ~CObject (void) |
Destructor. More... | |
CObject & | operator= (const CObject &src) THROWS_NONE |
Assignment operator. More... | |
bool | CanBeDeleted (void) const THROWS_NONE |
Check if object can be deleted. More... | |
bool | IsAllocatedInPool (void) const THROWS_NONE |
Check if object is allocated in memory pool (not system heap) More... | |
bool | Referenced (void) const THROWS_NONE |
Check if object is referenced. More... | |
bool | ReferencedOnlyOnce (void) const THROWS_NONE |
Check if object is referenced only once. More... | |
void | AddReference (void) const |
Add reference to object. More... | |
void | RemoveReference (void) const |
Remove reference to object. More... | |
void | ReleaseReference (void) const |
Remove reference without deleting object. More... | |
virtual void | DoNotDeleteThisObject (void) |
Mark this object as not allocated in heap – do not delete this object. More... | |
virtual void | DoDeleteThisObject (void) |
Mark this object as allocated in heap – object can be deleted. More... | |
void * | operator new (size_t size) |
Define new operator for memory allocation. More... | |
void * | operator new[] (size_t size) |
Define new[] operator for 'array' memory allocation. More... | |
void | operator delete (void *ptr) |
Define delete operator for memory deallocation. More... | |
void | operator delete[] (void *ptr) |
Define delete[] operator for memory deallocation. More... | |
void * | operator new (size_t size, void *place) |
Define new operator. More... | |
void | operator delete (void *ptr, void *place) |
Define delete operator. More... | |
void * | operator new (size_t size, CObjectMemoryPool *place) |
Define new operator using memory pool. More... | |
void | operator delete (void *ptr, CObjectMemoryPool *place) |
Define delete operator. More... | |
Public Member Functions inherited from CDebugDumpable | |
CDebugDumpable (void) | |
virtual | ~CDebugDumpable (void) |
void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
void | DumpToConsole (void) const |
Static Public Member Functions | |
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EBiomol (void) |
Access to EBiomol's attributes (values, names) as defined in spec. More... | |
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | ETech (void) |
Access to ETech's attributes (values, names) as defined in spec. More... | |
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | ECompleteness (void) |
Access to ECompleteness's attributes (values, names) as defined in spec. More... | |
Static Public Member Functions inherited from CSerialObject | |
static void | SetVerifyDataThread (ESerialVerifyData verify) |
static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
static string | UnassignedString (void) |
static CStringUTF8 | UnassignedStringUTF8 (void) |
static char | UnassignedByte (void) |
Static Public Member Functions inherited from CObject | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
Define method to throw null pointer exception. More... | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
static EAllocFillMode | GetAllocFillMode (void) |
static void | SetAllocFillMode (EAllocFillMode mode) |
static void | SetAllocFillMode (const string &value) |
Set mode from configuration parameter value. More... | |
Static Public Member Functions inherited from CDebugDumpable | |
static void | EnableDebugDump (bool on) |
Private Types | |
typedef CSerialObject | Tparent |
Private Member Functions | |
CMolInfo_Base (const CMolInfo_Base &) | |
CMolInfo_Base & | operator= (const CMolInfo_Base &) |
Private Attributes | |
Uint4 | m_set_State [1] |
int | m_Biomol |
int | m_Tech |
string | m_Techexp |
int | m_Completeness |
string | m_Gbmoltype |
Additional Inherited Members | |
Static Public Attributes inherited from CSerialObject | |
static const char * | ms_UnassignedStr = "<*unassigned*>" |
static const char | ms_UnassignedByte = char(0xcd) |
Static Public Attributes inherited from CObject | |
static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
Define possible object states. More... | |
static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
Heap signature was found. More... | |
static const TCount | eCounterBitsPlaceMask |
Mask for 'in heap' state flags. More... | |
static const int | eCounterStep = 1 << 2 |
Skip over the "in heap" bits. More... | |
static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
static const TCount | eCounterStateMask |
Valid object, and object in heap. More... | |
Protected Member Functions inherited from CObject | |
virtual void | DeleteThis (void) |
Virtual method "deleting" this object. More... | |
******* NOTE: * mol-type, modif, method, and org are consolidated and expanded * in Org-ref, BioSource, and MolInfo in this specification.
They * will be removed in later specifications. Do not use them in the * the future. Instead expect the new structures. * *************************** ********************************************************************
MolInfo gives information on the classification of the type and quality of the sequence
WARNING: this will replace GIBB-mol, GIBB-mod, GIBB-method
********************************************************************
Definition at line 87 of file MolInfo_.hpp.