CObjFingerprint Class Reference

Search Toolkit Book for CObjFingerprint

#include <gui/objutils/obj_fingerprint.hpp>

Collaboration diagram for CObjFingerprint:

Classes
struct	SFingerprint

Public Types
enum	EObjectType {   eUnknown = 0 , eFeature = 1 , eAlignment = 2 , eLocation = 3 ,   eGraph = 4 , eSnpTrack = 5 , eVarTrack = 6 , eComponent = 7 ,   eRsite = 8 , eVcfTrack = 9 }
typedef void(*	TFingerPFunc) (CChecksum &checksum, const CObject &obj, objects::CScope *scope, const CObjFingerprint &fingerP)
typedef struct CObjFingerprint::SFingerprint	SFingerprint

Public Member Functions
void	Fingerprint (CChecksum &checksum, const CObject &obj, objects::CScope *scope) const

Static Public Member Functions
static void	Register (TTypeInfo type_info, TFingerPFunc func)
static void	GetFingerprint (CChecksum &checksum, const CObject &obj, objects::CScope *scope=NULL)
static void	AddInteger (CChecksum &checksum, unsigned char *pvalue, int size)
static void	AddDouble (CChecksum &checksum, double value)
static string	GetFeatSignature (const objects::CSeq_feat &feat, objects::CScope *scope, const string &data_source="", const string &sAdditionalInfo="")
static string	GetFeatSignature (const objects::CSeq_feat &feat, objects::CScope *scope, const objects::CSeq_annot_Handle &annot_handle, const string &sAdditionalInfo="")
static string	GetFeatSignature (const objects::CSeq_feat &feat, const objects::CSeq_loc &loc, objects::CScope *scope, const objects::CSeq_annot_Handle &annot_handle, const string &sAdditionalInfo="")
	Get signature for a feature with a separate location. More...
static string	GetFeatSignature (const objects::CSeq_feat &feat, const objects::CSeq_loc &loc, objects::CScope *scope, const string &data_source="", const string &sAdditionalInfo="")
	Get signature for a feature with a separate location. More...
static string	GetGraphSignature (const objects::CSeq_graph &graph, objects::CScope *scope, const string &data_source="")
static string	GetSeqLocSignature (const objects::CSeq_loc &loc, objects::CScope *scope)
static string	GetHistogramSignature (const objects::CSeq_loc &loc, EObjectType obj_type, objects::CScope *scope, const string &title, const string &data_source="", int subtype=0)
static string	GetComponentSignature (const objects::CSeq_loc &comp_loc, const objects::CSeq_loc &mapped_loc, objects::CScope *scope)
static string	GetAlignSignature (const objects::CSeq_align &align, const objects::CSeq_loc &on_loc, objects::CScope *scope, const objects::CSeq_annot_Handle &annot_handle)
static string	GetAlignSignature (const objects::CSeq_align &align, const objects::CSeq_loc &on_loc, objects::CScope *scope, const string &data_source="")
static string	GetRsiteSignature (const objects::CSeq_feat &feat, int pnt, objects::CScope *scope)
static string	GetVcfVariantSignature (const objects::CVcfVariant &vcf_variant, objects::CScope *scope)
static void	ParseSignature (const string &sig, objects::CSeq_id_Handle &sih, TSeqPos &from, TSeqPos &to, EObjectType &type, int &subtype, Uint4 &fingerprint, Uint4 &ds_fingerprint, string &ds_name, objects::CScope *scope)
	parse signature with data source info. More...
static string	ParseSignatureDS (const string &sig)
static void	ParseSignature (const string &sig, SFingerprint &fp, objects::CScope *scope)

Private Types
typedef map< TTypeInfo, TFingerPFunc >	TMap

Private Member Functions
void	x_Register (TTypeInfo type_info, TFingerPFunc func)

Static Private Member Functions
static CObjFingerprint &	x_GetInstance ()

Private Attributes
TMap	m_Map

Detailed Description

Definition at line 54 of file obj_fingerprint.hpp.

Member Typedef Documentation

SFingerprint

typedef struct CObjFingerprint::SFingerprint CObjFingerprint::SFingerprint

TFingerPFunc

typedef void(* CObjFingerprint::TFingerPFunc) (CChecksum &checksum, const CObject &obj, objects::CScope *scope, const CObjFingerprint &fingerP)

Definition at line 57 of file obj_fingerprint.hpp.

TMap

typedef map<TTypeInfo, TFingerPFunc> CObjFingerprint::TMap

private

Definition at line 195 of file obj_fingerprint.hpp.

Member Enumeration Documentation

EObjectType

enum CObjFingerprint::EObjectType

Enumerator
eUnknown
eFeature
eAlignment
eLocation
eGraph
eSnpTrack
eVarTrack
eComponent
eRsite
eVcfTrack

Definition at line 91 of file obj_fingerprint.hpp.

Member Function Documentation

AddDouble()

void CObjFingerprint::AddDouble ( CChecksum &  checksum, double  value  )

static

Definition at line 143 of file obj_fingerprint.cpp.

References CChecksum::AddLine(), NStr::DoubleToString(), str(), and value.

Referenced by s_Fingerprint_Real_graph(), and s_Fingerprint_Seq_graph().

AddInteger()

void CObjFingerprint::AddInteger ( CChecksum &  checksum, unsigned char *  pvalue, int  size  )

static

Definition at line 113 of file obj_fingerprint.cpp.

References CChecksum::AddChars(), CChecksum::AddLine(), CByteSwap::PutInt4(), ncbi::grid::netcache::search::fields::size, str(), NStr::UInt8ToString(), and value.

Fingerprint()

void CObjFingerprint::Fingerprint	(	CChecksum &	checksum,
		const CObject &	obj,
		objects::CScope *	scope
	)		const

Definition at line 87 of file obj_fingerprint.cpp.

References map_checker< Container >::end(), map_checker< Container >::find(), CVcfVariant::GetLocation(), CSerialObject::GetThisTypeInfo(), m_Map, and NULL.

Referenced by GetFingerprint(), s_Fingerprint_Dbtag(), s_Fingerprint_Dense_diag(), s_Fingerprint_Dense_seg(), s_Fingerprint_Feat_id(), s_Fingerprint_Packed_seg(), s_Fingerprint_Packed_seqpnt(), s_Fingerprint_Seq_feat(), s_Fingerprint_Seq_graph(), s_Fingerprint_Seq_interval(), s_Fingerprint_Seq_loc(), s_Fingerprint_Seq_point(), s_Fingerprint_Sparse_align(), s_Fingerprint_Sparse_seg(), s_Fingerprint_Spliced_exon(), s_Fingerprint_Spliced_seg(), and s_Fingerprint_Std_seg().

GetAlignSignature() [1/2]

string CObjFingerprint::GetAlignSignature ( const objects::CSeq_align &  align, const objects::CSeq_loc &  on_loc, objects::CScope *  scope, const objects::CSeq_annot_Handle &  annot_handle  )

static

Definition at line 277 of file obj_fingerprint.cpp.

Referenced by CAlignGlyph::GetSignature().

GetAlignSignature() [2/2]

string CObjFingerprint::GetAlignSignature ( const objects::CSeq_align &  align, const objects::CSeq_loc &  on_loc, objects::CScope *  scope, const string &  data_source = ""  )

static

Definition at line 290 of file obj_fingerprint.cpp.

References CChecksum::AddLine(), CSeq_id::AsFastaString(), buf, eAlignment, eGetId_Canonical, CChecksum::GetChecksum(), GetFingerprint(), GetId(), CSeq_id_Handle::GetSeqId(), CSeqUtils::IsAlignDb(), CSeqUtils::IsNAA(), NCBI_ASSERT, NStr::NumericToString(), compile_time_bits::range(), s_EscapeDash(), and string.

GetComponentSignature()

string CObjFingerprint::GetComponentSignature ( const objects::CSeq_loc &  comp_loc, const objects::CSeq_loc &  mapped_loc, objects::CScope *  scope  )

static

Definition at line 424 of file obj_fingerprint.cpp.

References CSeq_id::AsFastaString(), buf, eComponent, eGetId_Canonical, CChecksum::GetChecksum(), GetFingerprint(), GetId(), CSeq_id_Handle::GetSeqId(), compile_time_bits::range(), and s_EscapeDash().

Referenced by CSegmentGlyph::GetSignature().

GetFeatSignature() [1/4]

string CObjFingerprint::GetFeatSignature ( const objects::CSeq_feat &  feat, const objects::CSeq_loc &  loc, objects::CScope *  scope, const objects::CSeq_annot_Handle &  annot_handle, const string &  sAdditionalInfo = ""  )

static

Get signature for a feature with a separate location.

Definition at line 169 of file obj_fingerprint.cpp.

References GetFeatSignature().

GetFeatSignature() [2/4]

string CObjFingerprint::GetFeatSignature ( const objects::CSeq_feat &  feat, const objects::CSeq_loc &  loc, objects::CScope *  scope, const string &  data_source = "", const string &  sAdditionalInfo = ""  )

static

Get signature for a feature with a separate location.

Definition at line 191 of file obj_fingerprint.cpp.

References CChecksum::AddLine(), CSeq_id::AsFastaString(), buf, eFeature, eGetId_Canonical, CChecksum::GetChecksum(), GetFingerprint(), CChecksum::GetHexSum(), GetId(), GetIdHandle(), CSeq_id_Handle::GetSeqId(), CSeqUtils::IsNAA(), CSeqUtils::isRmtAnnotName(), compile_time_bits::range(), and s_EscapeDash().

GetFeatSignature() [3/4]

string CObjFingerprint::GetFeatSignature ( const objects::CSeq_feat &  feat, objects::CScope *  scope, const objects::CSeq_annot_Handle &  annot_handle, const string &  sAdditionalInfo = ""  )

static

Definition at line 161 of file obj_fingerprint.cpp.

References GetFeatSignature().

GetFeatSignature() [4/4]

string CObjFingerprint::GetFeatSignature ( const objects::CSeq_feat &  feat, objects::CScope *  scope, const string &  data_source = "", const string &  sAdditionalInfo = ""  )

static

Definition at line 152 of file obj_fingerprint.cpp.

Referenced by GetFeatSignature(), CClonePlacementGlyph::GetSignature(), and CFeatGlyph::GetSignature().

GetFingerprint()

void CObjFingerprint::GetFingerprint ( CChecksum &  checksum, const CObject &  obj, objects::CScope *  scope = NULL  )

static

Definition at line 74 of file obj_fingerprint.cpp.

References Fingerprint(), and x_GetInstance().

Referenced by GetAlignSignature(), GetComponentSignature(), GetFeatSignature(), GetGraphSignature(), GetRsiteSignature(), GetSeqLocSignature(), and GetVcfVariantSignature().

GetGraphSignature()

string CObjFingerprint::GetGraphSignature ( const objects::CSeq_graph &  graph, objects::CScope *  scope, const string &  data_source = ""  )

static

Definition at line 241 of file obj_fingerprint.cpp.

References CChecksum::AddLine(), CSeq_id::AsFastaString(), buf, eGetId_Canonical, eGraph, CChecksum::GetChecksum(), GetFingerprint(), GetId(), CSeq_id_Handle::GetSeqId(), CSeqUtils::IsNAA(), compile_time_bits::range(), and s_EscapeDash().

GetHistogramSignature()

string CObjFingerprint::GetHistogramSignature ( const objects::CSeq_loc &  loc, EObjectType  obj_type, objects::CScope *  scope, const string &  title, const string &  data_source = "", int  subtype = 0  )

static

Definition at line 381 of file obj_fingerprint.cpp.

References CChecksum::AddLine(), CSeq_id::AsFastaString(), buf, eGetId_Canonical, CChecksum::GetChecksum(), GetId(), CSeq_id_Handle::GetSeqId(), CSeqUtils::IsNAA(), CSeqUtils::isRmtAnnotName(), compile_time_bits::range(), and s_EscapeDash().

Referenced by CHistogramGlyph::GetHTMLActiveAreas().

GetRsiteSignature()

string CObjFingerprint::GetRsiteSignature ( const objects::CSeq_feat &  feat, int  pnt, objects::CScope *  scope  )

static

Definition at line 450 of file obj_fingerprint.cpp.

References CSeq_id::AsFastaString(), buf, eGetId_Canonical, eRsite, CChecksum::GetChecksum(), GetFingerprint(), GetId(), GetIdHandle(), CSeq_feat_Base::GetLocation(), CSeq_id_Handle::GetSeqId(), and s_EscapeDash().

Referenced by CRsitesGlyph::GetHTMLActiveAreas().

GetSeqLocSignature()

string CObjFingerprint::GetSeqLocSignature ( const objects::CSeq_loc &  loc, objects::CScope *  scope  )

static

Definition at line 356 of file obj_fingerprint.cpp.

References CSeq_id::AsFastaString(), buf, eGetId_Canonical, eLocation, CChecksum::GetChecksum(), GetFingerprint(), GetId(), CSeq_id_Handle::GetSeqId(), compile_time_bits::range(), and s_EscapeDash().

Referenced by CSequenceTrack::GetSignature().

GetVcfVariantSignature()

string CObjFingerprint::GetVcfVariantSignature ( const objects::CVcfVariant &  vcf_variant, objects::CScope *  scope  )

static

Definition at line 468 of file obj_fingerprint.cpp.

References CSeq_id::AsFastaString(), buf, eGetId_Canonical, eVcfTrack, CChecksum::GetChecksum(), GetFingerprint(), GetId(), GetIdHandle(), CVcfVariant::GetLocation(), CSeq_id_Handle::GetSeqId(), compile_time_bits::range(), and s_EscapeDash().

Referenced by CVcfGlyph::GetSignature().

ParseSignature() [1/2]

void CObjFingerprint::ParseSignature ( const string &  sig, objects::CSeq_id_Handle &  sih, TSeqPos &  from, TSeqPos &  to, EObjectType &  type, int &  subtype, Uint4 &  fingerprint, Uint4 &  ds_fingerprint, string &  ds_name, objects::CScope *  scope  )

static

parse signature with data source info.

data source can either be a checksum or ds name.

Definition at line 490 of file obj_fingerprint.cpp.

References eUnknown, GetId(), CSeqUtils::IsAlignDb(), CSeqUtils::IsNAA(), NStr::MatchesMask(), NCBI_THROW, NStr::StringToUInt(), tmp, and CTrackUtils::TokenizeWithEscape().

Referenced by CSeqGraphicPane::OnSearchTip(), CSeqGraphicPane::OnZoomTip(), and ParseSignature().

ParseSignature() [2/2]

void CObjFingerprint::ParseSignature ( const string &  sig, SFingerprint &  fp, objects::CScope *  scope  )

inlinestatic

Definition at line 200 of file obj_fingerprint.hpp.

References fp, and ParseSignature().

ParseSignatureDS()

string CObjFingerprint::ParseSignatureDS ( const string &  sig )

static

Definition at line 547 of file obj_fingerprint.cpp.

References CTrackUtils::TokenizeWithEscape().

Register()

void CObjFingerprint::Register ( TTypeInfo  type_info, CObjFingerprint::TFingerPFunc  func  )

static

Definition at line 68 of file obj_fingerprint.cpp.

References x_GetInstance(), and x_Register().

Referenced by init_Seq_alignFP(), init_Seq_FeatFP(), init_Seq_graphFP(), init_Seq_idFP(), and init_Seq_locFP().

x_GetInstance()

CObjFingerprint & CObjFingerprint::x_GetInstance ( )

staticprivate

Definition at line 81 of file obj_fingerprint.cpp.

Referenced by GetFingerprint(), and Register().

x_Register()

void CObjFingerprint::x_Register ( TTypeInfo  type_info, TFingerPFunc  func  )

private

Definition at line 106 of file obj_fingerprint.cpp.

References m_Map.

Referenced by Register().

Member Data Documentation

m_Map

TMap CObjFingerprint::m_Map

private

Definition at line 196 of file obj_fingerprint.hpp.

Referenced by Fingerprint(), and x_Register().

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The documentation for this class was generated from the following files:

• include/gui/objutils/obj_fingerprint.hpp
• src/gui/objutils/obj_fingerprint.cpp