#include <misc/hgvs/objcoords.hpp>

Inheritance diagram for CObjectCoords:

Collaboration diagram for CObjectCoords:

Public Member Functions
	CObjectCoords (objects::CScope &scope)

CRef< CHGVS_Coordinate_Set >	GetCoordinates (const CSeq_id &id, TSeqPos pos, TSeqPos window=kSearchWindow)

void	GetCoordinates (CHGVS_Coordinate_Set &coords, const CSeq_id &id, TSeqPos pos, TSeqPos window=kSearchWindow)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Attributes
static const TSeqPos	kSearchWindow = 2000

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Attributes
CRef< objects::CScope >	m_Scope

Additional Inherited Members
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 48 of file objcoords.hpp.

Constructor & Destructor Documentation

◆ CObjectCoords()

CObjectCoords::CObjectCoords ( objects::CScope & scope )

Definition at line 812 of file objcoords.cpp.

Member Function Documentation

◆ GetCoordinates() [1/2]

void CObjectCoords::GetCoordinates	(	CHGVS_Coordinate_Set &	coords,
		const CSeq_id &	id,
		TSeqPos	pos,
		TSeqPos	window = `kSearchWindow`
	)

◆ GetCoordinates() [2/2]

CRef< CHGVS_Coordinate_Set > CObjectCoords::GetCoordinates	(	const CSeq_id &	id,
		TSeqPos	pos,
		TSeqPos	window = `kSearchWindow`
	)

Definition at line 818 of file objcoords.cpp.

Referenced by CSeqGraphicWidget::x_UpdateMarkerInfo().

Member Data Documentation

◆ kSearchWindow

const TSeqPos CObjectCoords::kSearchWindow = 2000

static

Definition at line 52 of file objcoords.hpp.

◆ m_Scope

CRef<objects::CScope> CObjectCoords::m_Scope

protected

Definition at line 58 of file objcoords.hpp.

Referenced by GetCoordinates().

The documentation for this class was generated from the following files:

include/misc/hgvs/objcoords.hpp
src/misc/hgvs/objcoords.cpp

Public Member Functions

Static Public Attributes

Protected Attributes

Additional Inherited Members