NCBI C++ ToolKit
Classes | Public Types | Public Member Functions | Static Public Attributes | Protected Member Functions | Protected Attributes | List of all members
COrfSearchForm Class Reference

Search Toolkit Book for COrfSearchForm

#include "orf_search_tool.hpp"
(Private to src/gui/packages/pkg_sequence.)

+ Inheritance diagram for COrfSearchForm:
+ Collaboration diagram for COrfSearchForm:

Classes

struct  SKozakPattern
 

Public Types

typedef COrfSearchQuery::TScopedLocs TScopedLocs
 
typedef struct SKozakPattern TKozakPattern
 
typedef list< TKozakPatternTKozakList
 
- Public Types inherited from CSearchFormBase
typedef vector< IDataMiningContext * > TContexts
 
typedef CMRUList< stringTMRUInputs
 
typedef objects::CFeatListItem TFeatTypeItem
 
typedef set< TFeatTypeItemTFeatTypeItemSet
 
typedef CSearchToolBase::EPatternType TPatternType
 
typedef map< string, TPatternTypeTNameToType
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Public Types inherited from IDMSearchForm
enum  ECommands { eCmdDMSearch = 11000 }
 
enum  TDialogType { FEATURE_SEL_DIALOG }
 

Public Member Functions

 COrfSearchForm (COrfSearchTool &tool)
 COrfSearchForm. More...
 
 ~COrfSearchForm ()
 
virtual CIRef< IDMSearchQueryConstructQuery ()
 
virtual wxSizer * GetWidget (wxWindow *parent)
 return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
 
IDMSearchForm implementation
virtual void Create ()
 
virtual void Init ()
 
virtual void Update ()
 
- Public Member Functions inherited from CSearchFormBase
 CSearchFormBase ()
 CSearchFormBase. More...
 
virtual ~CSearchFormBase ()
 
virtual void SetController (IDMSearchFormController *controller)
 
virtual void UpdateContexts ()
 updates m_ContextCombo More...
 
void UpdateContextCombo (wxChoice *combo)
 
virtual void PopupADialog (TDialogType dt)
 TODO this function should be here - it should be move the the form that needs this dialog. More...
 
virtual void SetDictionary (list< string > *ddd)
 
virtual void Push ()
 
virtual void SetRangeLimit (bool bLimit)
 
virtual string GetMainValue ()
 get/set main search value, this is separate from settings More...
 
virtual void SetMainValue (string val)
 
virtual void SetRegistryPath (const string &reg_path)
 
virtual void LoadSettings ()
 
virtual void SaveSettings () const
 
- Public Member Functions inherited from CObjectEx
 CObjectEx (void)
 
virtual ~CObjectEx (void)
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from CWeakObject
 CWeakObject (void)
 
virtual ~CWeakObject (void)
 
CPtrToObjectProxyGetPtrProxy (void) const
 Get pointer to proxy object containing pointer to this object. More...
 
- Public Member Functions inherited from IDMSearchForm
virtual ~IDMSearchForm ()
 
virtual bool IsRunning () const
 the tool associated with the form is running More...
 
virtual string GetCurrentModeKey ()
 return a section name for the current mode or "" More...
 
- Public Member Functions inherited from IRegSettings
virtual ~IRegSettings ()
 

Static Public Attributes

static TKozakList m_Kozak
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 

Protected Member Functions

virtual void x_LoadSettings (const CRegistryReadView &view)
 
virtual void x_SaveSettings (CRegistryWriteView view) const
 
virtual IDMSearchToolx_GetTool ()
 
void x_UpdateKozak ()
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 
- Protected Member Functions inherited from CWeakObject
void CleanWeakRefs (void) const
 Method cleaning all CWeakRefs referencing at this moment to the object After calling to this method all existing CWeakRefs referencing to the object will return NULL, so it effectively will be equal to deleting the object. More...
 

Protected Attributes

CRef< COrfSearchToolm_Tool
 
wxChoice * m_DbCombo
 
wxChoice * m_GencodeCombo
 
wxChoice * m_StartorfCombo
 
wxTextCtrl * m_BasepairsText
 
vector< ISeqLocSearchContext * > m_SeqLocContexts
 
string m_Gencode
 
string m_StartOrf
 
string m_MinPairs
 
- Protected Attributes inherited from CSearchFormBase
TContexts m_Contexts
 
IDataMiningContextm_ActiveContext
 
TFeatTypeItemSet m_FeatTypesSet
 
IDMSearchFormControllerm_Controller
 
wxSizer * m_Sizer
 
CSearchControlm_Text
 
string m_RegPath
 
string m_Input
 
bool m_bRange
 

Additional Inherited Members

- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Detailed Description

Definition at line 121 of file orf_search_tool.hpp.


The documentation for this class was generated from the following files:
Modified on Tue May 28 05:52:49 2024 by modify_doxy.py rev. 669887