NCBI C++ ToolKit
Public Types | Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members

Represents ASN.1 type Org-ref defined in file seqfeat.asn

Search Toolkit Book for COrg_ref_Base

*** Org-ref *********************************************** * * Reference to an organism * defines only the organism. More...

#include <objects/seqfeat/Org_ref_.hpp>

+ Inheritance diagram for COrg_ref_Base:
+ Collaboration diagram for COrg_ref_Base:

Public Types

enum class  E_memberIndex {
  e__allMandatory = 0 , e_taxname , e_common , e_mod ,
  e_db , e_syn , e_orgname
}
 
typedef string TTaxname
 
typedef string TCommon
 
typedef list< stringTMod
 
typedef vector< CRef< CDbtag > > TDb
 
typedef list< stringTSyn
 
typedef COrgName TOrgname
 
typedef Tparent::CMemberIndex< E_memberIndex, 7 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 COrg_ref_Base (void)
 
virtual ~COrg_ref_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetTaxname (void) const
 preferred formal name Check if a value has been assigned to Taxname data member. More...
 
bool CanGetTaxname (void) const
 Check if it is safe to call GetTaxname method. More...
 
void ResetTaxname (void)
 Reset Taxname data member. More...
 
const TTaxnameGetTaxname (void) const
 Get the Taxname member data. More...
 
void SetTaxname (const TTaxname &value)
 Assign a value to Taxname data member. More...
 
void SetTaxname (TTaxname &&value)
 
TTaxnameSetTaxname (void)
 Assign a value to Taxname data member. More...
 
bool IsSetCommon (void) const
 common name Check if a value has been assigned to Common data member. More...
 
bool CanGetCommon (void) const
 Check if it is safe to call GetCommon method. More...
 
void ResetCommon (void)
 Reset Common data member. More...
 
const TCommonGetCommon (void) const
 Get the Common member data. More...
 
void SetCommon (const TCommon &value)
 Assign a value to Common data member. More...
 
void SetCommon (TCommon &&value)
 
TCommonSetCommon (void)
 Assign a value to Common data member. More...
 
bool IsSetMod (void) const
 unstructured modifiers Check if a value has been assigned to Mod data member. More...
 
bool CanGetMod (void) const
 Check if it is safe to call GetMod method. More...
 
void ResetMod (void)
 Reset Mod data member. More...
 
const TModGetMod (void) const
 Get the Mod member data. More...
 
TModSetMod (void)
 Assign a value to Mod data member. More...
 
bool IsSetDb (void) const
 ids in taxonomic or culture dbases Check if a value has been assigned to Db data member. More...
 
bool CanGetDb (void) const
 Check if it is safe to call GetDb method. More...
 
void ResetDb (void)
 Reset Db data member. More...
 
const TDbGetDb (void) const
 Get the Db member data. More...
 
TDbSetDb (void)
 Assign a value to Db data member. More...
 
bool IsSetSyn (void) const
 synonyms for taxname or common Check if a value has been assigned to Syn data member. More...
 
bool CanGetSyn (void) const
 Check if it is safe to call GetSyn method. More...
 
void ResetSyn (void)
 Reset Syn data member. More...
 
const TSynGetSyn (void) const
 Get the Syn member data. More...
 
TSynSetSyn (void)
 Assign a value to Syn data member. More...
 
bool IsSetOrgname (void) const
 Check if a value has been assigned to Orgname data member. More...
 
bool CanGetOrgname (void) const
 Check if it is safe to call GetOrgname method. More...
 
void ResetOrgname (void)
 Reset Orgname data member. More...
 
const TOrgnameGetOrgname (void) const
 Get the Orgname member data. More...
 
void SetOrgname (TOrgname &value)
 Assign a value to Orgname data member. More...
 
TOrgnameSetOrgname (void)
 Assign a value to Orgname data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 COrg_ref_Base (const COrg_ref_Base &)
 
COrg_ref_Baseoperator= (const COrg_ref_Base &)
 

Private Attributes

Uint4 m_set_State [1]
 
string m_Taxname
 
string m_Common
 
list< stringm_Mod
 
vector< CRef< CDbtag > > m_Db
 
list< stringm_Syn
 
CRef< TOrgnamem_Orgname
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

*** Org-ref *********************************************** * * Reference to an organism * defines only the organism.

. lower levels of detail for biological * molecules are provided by the Source object *

COrg_ref_Base

Definition at line 85 of file Org_ref_.hpp.


The documentation for this class was generated from the following files:
Modified on Sat Feb 24 07:48:11 2024 by modify_doxy.py rev. 669887