NCBI C++ ToolKit
Public Types | Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members

Represents ASN.1 type PC-Atoms defined in file pcsubstance.asn

Search Toolkit Book for CPC_Atoms_Base

Atom Information (in Parallel Arrays) More...

#include <objects/pcsubstance/PC_Atoms_.hpp>

+ Inheritance diagram for CPC_Atoms_Base:
+ Collaboration diagram for CPC_Atoms_Base:

Public Types

enum class  E_memberIndex {
  e__allMandatory = 0 , e_aid , e_element , e_label ,
  e_isotope , e_charge , e_radical , e_source ,
  e_comment
}
 
typedef vector< intTAid
 
typedef vector< intTElement
 
typedef list< CRef< CPC_AtomString > > TLabel
 
typedef list< CRef< CPC_AtomInt > > TIsotope
 
typedef list< CRef< CPC_AtomInt > > TCharge
 
typedef list< CRef< CPC_AtomRadical > > TRadical
 
typedef list< CRef< CPC_AtomSource > > TSource
 
typedef list< CRef< CPC_AtomString > > TComment
 
typedef Tparent::CMemberIndex< E_memberIndex, 9 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CPC_Atoms_Base (void)
 
virtual ~CPC_Atoms_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetAid (void) const
 [Note: Parallel Arrays must be kept Synchronized] Atom Identifiers (vector) Note: Atom ID's must be greater than "0" Check if a value has been assigned to Aid data member. More...
 
bool CanGetAid (void) const
 Check if it is safe to call GetAid method. More...
 
void ResetAid (void)
 Reset Aid data member. More...
 
const TAidGetAid (void) const
 Get the Aid member data. More...
 
TAidSetAid (void)
 Assign a value to Aid data member. More...
 
bool IsSetElement (void) const
 Atomic Numbers (vector) Check if a value has been assigned to Element data member. More...
 
bool CanGetElement (void) const
 Check if it is safe to call GetElement method. More...
 
void ResetElement (void)
 Reset Element data member. More...
 
const TElementGetElement (void) const
 Get the Element member data. More...
 
TElementSetElement (void)
 Assign a value to Element data member. More...
 
bool IsSetLabel (void) const
 Independent Arrays of ID-Value Pairs (Technically allows multiple values per Atom) Atom labels Check if a value has been assigned to Label data member. More...
 
bool CanGetLabel (void) const
 Check if it is safe to call GetLabel method. More...
 
void ResetLabel (void)
 Reset Label data member. More...
 
const TLabelGetLabel (void) const
 Get the Label member data. More...
 
TLabelSetLabel (void)
 Assign a value to Label data member. More...
 
bool IsSetIsotope (void) const
 Isotopic Information Check if a value has been assigned to Isotope data member. More...
 
bool CanGetIsotope (void) const
 Check if it is safe to call GetIsotope method. More...
 
void ResetIsotope (void)
 Reset Isotope data member. More...
 
const TIsotopeGetIsotope (void) const
 Get the Isotope member data. More...
 
TIsotopeSetIsotope (void)
 Assign a value to Isotope data member. More...
 
bool IsSetCharge (void) const
 Formal Charges Check if a value has been assigned to Charge data member. More...
 
bool CanGetCharge (void) const
 Check if it is safe to call GetCharge method. More...
 
void ResetCharge (void)
 Reset Charge data member. More...
 
const TChargeGetCharge (void) const
 Get the Charge member data. More...
 
TChargeSetCharge (void)
 Assign a value to Charge data member. More...
 
bool IsSetRadical (void) const
 Radical Information Check if a value has been assigned to Radical data member. More...
 
bool CanGetRadical (void) const
 Check if it is safe to call GetRadical method. More...
 
void ResetRadical (void)
 Reset Radical data member. More...
 
const TRadicalGetRadical (void) const
 Get the Radical member data. More...
 
TRadicalSetRadical (void)
 Assign a value to Radical data member. More...
 
bool IsSetSource (void) const
 E.g. More...
 
bool CanGetSource (void) const
 Check if it is safe to call GetSource method. More...
 
void ResetSource (void)
 Reset Source data member. More...
 
const TSourceGetSource (void) const
 Get the Source member data. More...
 
TSourceSetSource (void)
 Assign a value to Source data member. More...
 
bool IsSetComment (void) const
 Atom Comments Check if a value has been assigned to Comment data member. More...
 
bool CanGetComment (void) const
 Check if it is safe to call GetComment method. More...
 
void ResetComment (void)
 Reset Comment data member. More...
 
const TCommentGetComment (void) const
 Get the Comment member data. More...
 
TCommentSetComment (void)
 Assign a value to Comment data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 CPC_Atoms_Base (const CPC_Atoms_Base &)
 
CPC_Atoms_Baseoperator= (const CPC_Atoms_Base &)
 

Private Attributes

Uint4 m_set_State [1]
 
vector< intm_Aid
 
vector< intm_Element
 
list< CRef< CPC_AtomString > > m_Label
 
list< CRef< CPC_AtomInt > > m_Isotope
 
list< CRef< CPC_AtomInt > > m_Charge
 
list< CRef< CPC_AtomRadical > > m_Radical
 
list< CRef< CPC_AtomSource > > m_Source
 
list< CRef< CPC_AtomString > > m_Comment
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Atom Information (in Parallel Arrays)

CPC_Atoms_Base

Definition at line 82 of file PC_Atoms_.hpp.


The documentation for this class was generated from the following files:
Modified on Sun May 19 04:48:04 2024 by modify_doxy.py rev. 669887