AddReference(void) const | CObject | inline |
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive) | CSerialObject | virtual |
CanBeDeleted(void) const THROWS_NONE | CObject | inline |
CanGetBl2seq_mode(void) const | CParameters_Base | inline |
CanGetCbs(void) const | CParameters_Base | inline |
CanGetDb_gencode(void) const | CParameters_Base | inline |
CanGetEntrez_query(void) const | CParameters_Base | inline |
CanGetEntrez_query(void) const | CParameters_Base | |
CanGetExpect(void) const | CParameters_Base | inline |
CanGetExpect(void) const | CParameters_Base | |
CanGetFilter(void) const | CParameters_Base | inline |
CanGetFilter(void) const | CParameters_Base | |
CanGetGap_extend(void) const | CParameters_Base | inline |
CanGetGap_extend(void) const | CParameters_Base | |
CanGetGap_open(void) const | CParameters_Base | inline |
CanGetGap_open(void) const | CParameters_Base | |
CanGetInclude(void) const | CParameters_Base | inline |
CanGetInclude(void) const | CParameters_Base | |
CanGetMatrix(void) const | CParameters_Base | inline |
CanGetMatrix(void) const | CParameters_Base | |
CanGetPattern(void) const | CParameters_Base | inline |
CanGetPattern(void) const | CParameters_Base | |
CanGetQuery_gencode(void) const | CParameters_Base | inline |
CanGetSc_match(void) const | CParameters_Base | inline |
CanGetSc_match(void) const | CParameters_Base | |
CanGetSc_mismatch(void) const | CParameters_Base | inline |
CanGetSc_mismatch(void) const | CParameters_Base | |
CDebugDumpable(void) | CDebugDumpable | inline |
CheckReferenceOverflow(TCount count) const | CObject | private |
CObject(void) | CObject | |
CObject(const CObject &src) | CObject | |
CParameters(void) | CParameters | inline |
CParameters(const CParameters &value) | CParameters | private |
CParameters(void) | CParameters | |
CParameters(const CParameters &value) | CParameters | private |
CParameters_Base(void) | CParameters_Base | |
CParameters_Base(const CParameters_Base &) | CParameters_Base | private |
CParameters_Base(void) | CParameters_Base | |
CParameters_Base(const CParameters_Base &) | CParameters_Base | private |
CSerialObject(void) | CSerialObject | |
DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CSerialObject | virtual |
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DECLARE_INTERNAL_TYPE_INFO() | CParameters_Base | |
DECLARE_INTERNAL_TYPE_INFO() | CParameters_Base | |
DeleteThis(void) | CObject | protectedvirtual |
DoDeleteThisObject(void) | CObject | virtual |
DoNotDeleteThisObject(void) | CObject | virtual |
DumpToConsole(void) const | CDebugDumpable | |
E_memberIndex enum name | CParameters_Base | |
E_memberIndex enum name | CParameters_Base | |
EAllocFillMode enum name | CObject | |
eAllocFillNone enum value | CObject | |
eAllocFillPattern enum value | CObject | |
eAllocFillZero enum value | CObject | |
eCounterBitsCanBeDeleted | CObject | static |
eCounterBitsInPlainHeap | CObject | static |
eCounterBitsPlaceMask | CObject | static |
eCounterStateMask | CObject | static |
eCounterStep | CObject | static |
eCounterValid | CObject | static |
EnableDebugDump(bool on) | CDebugDumpable | static |
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const | CSerialObject | virtual |
GetAllocFillMode(void) | CObject | static |
GetBl2seq_mode(void) const | CParameters_Base | inline |
GetCbs(void) const | CParameters_Base | inline |
GetDb_gencode(void) const | CParameters_Base | inline |
GetEntrez_query(void) const | CParameters_Base | inline |
GetEntrez_query(void) const | CParameters_Base | |
GetExpect(void) const | CParameters_Base | inline |
GetExpect(void) const | CParameters_Base | |
GetFilter(void) const | CParameters_Base | inline |
GetFilter(void) const | CParameters_Base | |
GetGap_extend(void) const | CParameters_Base | inline |
GetGap_extend(void) const | CParameters_Base | |
GetGap_open(void) const | CParameters_Base | inline |
GetGap_open(void) const | CParameters_Base | |
GetInclude(void) const | CParameters_Base | inline |
GetInclude(void) const | CParameters_Base | |
GetMatrix(void) const | CParameters_Base | inline |
GetMatrix(void) const | CParameters_Base | |
GetNamespaceName(void) const | CSerialObject | |
GetNamespacePrefix(void) const | CSerialObject | |
GetPattern(void) const | CParameters_Base | inline |
GetPattern(void) const | CParameters_Base | |
GetQuery_gencode(void) const | CParameters_Base | inline |
GetSc_match(void) const | CParameters_Base | inline |
GetSc_match(void) const | CParameters_Base | |
GetSc_mismatch(void) const | CParameters_Base | inline |
GetSc_mismatch(void) const | CParameters_Base | |
GetThisTypeInfo(void) const =0 | CSerialObject | pure virtual |
HasNamespaceName(void) const | CSerialObject | |
HasNamespacePrefix(void) const | CSerialObject | |
InitCounter(void) | CObject | inlineprivate |
InvalidObject(void) const | CObject | private |
IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
IsSetBl2seq_mode(void) const | CParameters_Base | inline |
IsSetCbs(void) const | CParameters_Base | inline |
IsSetDb_gencode(void) const | CParameters_Base | inline |
IsSetEntrez_query(void) const | CParameters_Base | inline |
IsSetEntrez_query(void) const | CParameters_Base | |
IsSetExpect(void) const | CParameters_Base | inline |
IsSetExpect(void) const | CParameters_Base | |
IsSetFilter(void) const | CParameters_Base | inline |
IsSetFilter(void) const | CParameters_Base | |
IsSetGap_extend(void) const | CParameters_Base | inline |
IsSetGap_extend(void) const | CParameters_Base | |
IsSetGap_open(void) const | CParameters_Base | inline |
IsSetGap_open(void) const | CParameters_Base | |
IsSetInclude(void) const | CParameters_Base | inline |
IsSetInclude(void) const | CParameters_Base | |
IsSetMatrix(void) const | CParameters_Base | inline |
IsSetMatrix(void) const | CParameters_Base | |
IsSetPattern(void) const | CParameters_Base | inline |
IsSetPattern(void) const | CParameters_Base | |
IsSetQuery_gencode(void) const | CParameters_Base | inline |
IsSetSc_match(void) const | CParameters_Base | inline |
IsSetSc_match(void) const | CParameters_Base | |
IsSetSc_mismatch(void) const | CParameters_Base | inline |
IsSetSc_mismatch(void) const | CParameters_Base | |
m_Bl2seq_mode | CParameters_Base | private |
m_Cbs | CParameters_Base | private |
m_Counter | CObject | mutableprivate |
m_Db_gencode | CParameters_Base | private |
m_Entrez_query | CParameters_Base | private |
m_Expect | CParameters_Base | private |
m_Filter | CParameters_Base | private |
m_Gap_extend | CParameters_Base | private |
m_Gap_open | CParameters_Base | private |
m_Include | CParameters_Base | private |
m_Matrix | CParameters_Base | private |
m_Pattern | CParameters_Base | private |
m_Query_gencode | CParameters_Base | private |
m_Sc_match | CParameters_Base | private |
m_Sc_mismatch | CParameters_Base | private |
m_set_State | CParameters_Base | private |
ms_UnassignedByte | CSerialObject | static |
ms_UnassignedStr | CSerialObject | static |
ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
operator delete(void *ptr) | CObject | |
operator delete(void *ptr, void *place) | CObject | |
operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
operator delete[](void *ptr) | CObject | |
operator new(size_t size) | CObject | |
operator new(size_t size, void *place) | CObject | |
operator new(size_t size, CObjectMemoryPool *place) | CObject | |
operator new[](size_t size) | CObject | |
operator=(const CParameters &value) | CParameters | private |
operator=(const CParameters &value) | CParameters | private |
CParameters_Base::CSerialObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
Referenced(void) const THROWS_NONE | CObject | inline |
ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
ReleaseReference(void) const | CObject | |
RemoveLastReference(TCount count) const | CObject | private |
RemoveReference(void) const | CObject | inline |
Reset(void) | CParameters_Base | virtual |
Reset(void) | CParameters_Base | virtual |
ResetBl2seq_mode(void) | CParameters_Base | |
ResetCbs(void) | CParameters_Base | inline |
ResetDb_gencode(void) | CParameters_Base | inline |
ResetEntrez_query(void) | CParameters_Base | |
ResetEntrez_query(void) | CParameters_Base | |
ResetExpect(void) | CParameters_Base | inline |
ResetExpect(void) | CParameters_Base | |
ResetFilter(void) | CParameters_Base | |
ResetFilter(void) | CParameters_Base | |
ResetGap_extend(void) | CParameters_Base | inline |
ResetGap_extend(void) | CParameters_Base | |
ResetGap_open(void) | CParameters_Base | inline |
ResetGap_open(void) | CParameters_Base | |
ResetInclude(void) | CParameters_Base | inline |
ResetInclude(void) | CParameters_Base | |
ResetMatrix(void) | CParameters_Base | |
ResetMatrix(void) | CParameters_Base | |
ResetPattern(void) | CParameters_Base | |
ResetPattern(void) | CParameters_Base | |
ResetQuery_gencode(void) | CParameters_Base | inline |
ResetSc_match(void) | CParameters_Base | inline |
ResetSc_match(void) | CParameters_Base | |
ResetSc_mismatch(void) | CParameters_Base | inline |
ResetSc_mismatch(void) | CParameters_Base | |
SetAllocFillMode(EAllocFillMode mode) | CObject | static |
SetAllocFillMode(const string &value) | CObject | static |
SetBl2seq_mode(const TBl2seq_mode &value) | CParameters_Base | inline |
SetBl2seq_mode(TBl2seq_mode &&value) | CParameters_Base | inline |
SetBl2seq_mode(void) | CParameters_Base | inline |
SetCbs(TCbs value) | CParameters_Base | inline |
SetCbs(void) | CParameters_Base | inline |
SetDb_gencode(TDb_gencode value) | CParameters_Base | inline |
SetDb_gencode(void) | CParameters_Base | inline |
SetEntrez_query(const TEntrez_query &value) | CParameters_Base | inline |
SetEntrez_query(TEntrez_query &&value) | CParameters_Base | inline |
SetEntrez_query(void) | CParameters_Base | inline |
SetEntrez_query(const TEntrez_query &value) | CParameters_Base | |
SetEntrez_query(TEntrez_query &&value) | CParameters_Base | |
SetEntrez_query(void) | CParameters_Base | |
SetExpect(TExpect value) | CParameters_Base | inline |
SetExpect(void) | CParameters_Base | inline |
SetExpect(TExpect value) | CParameters_Base | |
SetExpect(void) | CParameters_Base | |
SetFilter(const TFilter &value) | CParameters_Base | inline |
SetFilter(TFilter &&value) | CParameters_Base | inline |
SetFilter(void) | CParameters_Base | inline |
SetFilter(const TFilter &value) | CParameters_Base | |
SetFilter(TFilter &&value) | CParameters_Base | |
SetFilter(void) | CParameters_Base | |
SetGap_extend(TGap_extend value) | CParameters_Base | inline |
SetGap_extend(void) | CParameters_Base | inline |
SetGap_extend(TGap_extend value) | CParameters_Base | |
SetGap_extend(void) | CParameters_Base | |
SetGap_open(TGap_open value) | CParameters_Base | inline |
SetGap_open(void) | CParameters_Base | inline |
SetGap_open(TGap_open value) | CParameters_Base | |
SetGap_open(void) | CParameters_Base | |
SetInclude(TInclude value) | CParameters_Base | inline |
SetInclude(void) | CParameters_Base | inline |
SetInclude(TInclude value) | CParameters_Base | |
SetInclude(void) | CParameters_Base | |
SetMatrix(const TMatrix &value) | CParameters_Base | inline |
SetMatrix(TMatrix &&value) | CParameters_Base | inline |
SetMatrix(void) | CParameters_Base | inline |
SetMatrix(const TMatrix &value) | CParameters_Base | |
SetMatrix(TMatrix &&value) | CParameters_Base | |
SetMatrix(void) | CParameters_Base | |
SetPattern(const TPattern &value) | CParameters_Base | inline |
SetPattern(TPattern &&value) | CParameters_Base | inline |
SetPattern(void) | CParameters_Base | inline |
SetPattern(const TPattern &value) | CParameters_Base | |
SetPattern(TPattern &&value) | CParameters_Base | |
SetPattern(void) | CParameters_Base | |
SetQuery_gencode(TQuery_gencode value) | CParameters_Base | inline |
SetQuery_gencode(void) | CParameters_Base | inline |
SetSc_match(TSc_match value) | CParameters_Base | inline |
SetSc_match(void) | CParameters_Base | inline |
SetSc_match(TSc_match value) | CParameters_Base | |
SetSc_match(void) | CParameters_Base | |
SetSc_mismatch(TSc_mismatch value) | CParameters_Base | inline |
SetSc_mismatch(void) | CParameters_Base | inline |
SetSc_mismatch(TSc_mismatch value) | CParameters_Base | |
SetSc_mismatch(void) | CParameters_Base | |
SetVerifyDataGlobal(ESerialVerifyData verify) | CSerialObject | static |
SetVerifyDataThread(ESerialVerifyData verify) | CSerialObject | static |
sm_DumpEnabled | CDebugDumpable | privatestatic |
TBl2seq_mode typedef | CParameters_Base | |
TCbs typedef | CParameters_Base | |
TCount typedef | CObject | |
TCounter typedef | CObject | |
TDb_gencode typedef | CParameters_Base | |
TEntrez_query typedef | CParameters_Base | |
TEntrez_query typedef | CParameters_Base | |
TExpect typedef | CParameters_Base | |
TExpect typedef | CParameters_Base | |
TFilter typedef | CParameters_Base | |
TFilter typedef | CParameters_Base | |
TGap_extend typedef | CParameters_Base | |
TGap_extend typedef | CParameters_Base | |
TGap_open typedef | CParameters_Base | |
TGap_open typedef | CParameters_Base | |
ThrowNullPointerException(void) | CObject | static |
ThrowNullPointerException(const type_info &type) | CObject | static |
ThrowUnassigned(TMemberIndex index) const | CSerialObject | |
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) const | CSerialObject | |
TInclude typedef | CParameters_Base | |
TInclude typedef | CParameters_Base | |
TLockerType typedef | CObject | |
TMatrix typedef | CParameters_Base | |
TMatrix typedef | CParameters_Base | |
TmemberIndex typedef | CParameters_Base | |
TmemberIndex typedef | CParameters_Base | |
Tparent typedef | CParameters | private |
Tparent typedef | CParameters | private |
TPattern typedef | CParameters_Base | |
TPattern typedef | CParameters_Base | |
TQuery_gencode typedef | CParameters_Base | |
TSc_match typedef | CParameters_Base | |
TSc_match typedef | CParameters_Base | |
TSc_mismatch typedef | CParameters_Base | |
TSc_mismatch typedef | CParameters_Base | |
UnassignedByte(void) | CSerialObject | inlinestatic |
UnassignedString(void) | CSerialObject | inlinestatic |
UnassignedStringUTF8(void) | CSerialObject | inlinestatic |
x_GetVerifyData(void) | CSerialObject | privatestatic |
~CDebugDumpable(void) | CDebugDumpable | virtual |
~CObject(void) | CObject | virtual |
~CParameters(void) | CParameters | |
~CParameters(void) | CParameters | |
~CParameters_Base(void) | CParameters_Base | virtual |
~CParameters_Base(void) | CParameters_Base | virtual |
~CSerialObject(void) | CSerialObject | virtual |