CPhyloCSFData Class Reference

Search Toolkit Book for CPhyloCSFData

#include <algo/gnomon/pcsf.hpp>

Collaboration diagram for CPhyloCSFData:

Public Member Functions
void	Read (CNcbiIstream &from)
void	Write (CNcbiOstream &out) const
SPhyloCSFSlice *	CreateSliceForContig (const string &contig_acc) const
void	CompactFullScores (const map< string, array< TFVec, 2 >> &scores)

Private Attributes
map< string, array< SPhyloCSFCompactScore, 2 > >	m_contig_scores

Detailed Description

Definition at line 105 of file pcsf.hpp.

Member Function Documentation

CompactFullScores()

void CPhyloCSFData::CompactFullScores ( const map< string, array< TFVec, 2 >> &  scores )

inline

Definition at line 190 of file pcsf.hpp.

References map_checker< Container >::clear(), i, and m_contig_scores.

CreateSliceForContig()

SPhyloCSFSlice* CPhyloCSFData::CreateSliceForContig ( const string &  contig_acc ) const

inline

Definition at line 181 of file pcsf.hpp.

References map_checker< Container >::end(), map_checker< Container >::find(), m_contig_scores, and SPhyloCSFSlice::m_scoresp.

Read()

void CPhyloCSFData::Read ( CNcbiIstream &  from )

inline

Definition at line 107 of file pcsf.hpp.

References buf, map_checker< Container >::clear(), exit(), and m_contig_scores.

Write()

void CPhyloCSFData::Write ( CNcbiOstream &  out ) const

inline

Definition at line 148 of file pcsf.hpp.

References exit(), int, len, m_contig_scores, and out().

Member Data Documentation

m_contig_scores

map<string, array<SPhyloCSFCompactScore, 2> > CPhyloCSFData::m_contig_scores

private

Definition at line 205 of file pcsf.hpp.

Referenced by CompactFullScores(), CreateSliceForContig(), Read(), and Write().

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The documentation for this class was generated from the following file:

• include/algo/gnomon/pcsf.hpp