NCBI C++ ToolKit
CPileUpGraph Member List

This is the complete list of members for CPileUpGraph, including all inherited members.

AddReference(void) constCObjectinline
CanBeDeleted(void) const THROWS_NONECObjectinline
CDebugDumpable(void)CDebugDumpableinline
CheckReferenceOverflow(TCount count) constCObjectprivate
CObject(void)CObject
CObject(const CObject &src)CObject
CPileUpGraph(const string &data_key)CPileUpGraph
CreateCacheKey(objects::CScope &scope, const objects::CSeq_id &seq_id, const string &remote_path)CPileUpGraphstatic
CreateCompoundID(objects::CScope &scope, const objects::CSeq_id &seq_id, const string &remote_path)CSparseGraphstatic
CSparseGraph()CSparseGraph
CSparseGraph(const CSparseGraph &data)CSparseGraph
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
GetAllocFillMode(void)CObjectstatic
GetMissingRegions(const TSeqRange &range, vector< TSeqRange > &missing_ranges)CSparseGraph
GetNumberOfReads(const TSeqRange &range)CPileUpGraph
GetStorageName()CPileUpGraphinlinestatic
Init(TGraphCachePool &icache_pool)CSparseGraphvirtual
InitCounter(void)CObjectinlineprivate
InitFromCompoundID(CCompoundID id)CSparseGraph
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
IsCacheGood() constCSparseGraphinline
m_CounterCObjectmutableprivate
m_DataCSparseGraphprotected
m_DataMapCSparseGraphprotected
m_DataMutexCSparseGraphprotected
m_DataSizeCSparseGraphprotected
m_IsCacheGoodCSparseGraphprotected
m_LastCheckedCSparseGraphprotected
m_LastModifiedCSparseGraphprotected
m_LastSyncedCSparseGraphprotected
m_NetCacheKeyCSparseGraphprotected
m_RemotePathCSparseGraphprotected
m_SeqIdCSparseGraphprotected
m_SessionTagCSparseGraphprotected
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CObject &src) THROWS_NONECObjectinline
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
Save(TGraphCachePool &icache_pool)CSparseGraphvirtual
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
sm_DumpEnabledCDebugDumpableprivatestatic
TCount typedefCObject
TCounter typedefCObject
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TLockerType typedefCObject
TSparseVector typedefCSparseGraphprotected
TUpdateMap typedefCSparseGraph
TValType typedefCSparseGraph
Update(const TSeqRange &range, const TUpdateMap &update)CSparseGraph
UpdateAlignStats(const TSeqRange &range, float window, CAlnStatGlyph::TStatVec &stats)CPileUpGraph
x_CheckRemoteData()CSparseGraphprotected
x_ReadData(ICache &icache, const string &data_key, const string &tag, TSparseVector &sv, bm::word_t *tb=0)CSparseGraphprotected
x_ReadMap(ICache &icache, string &tag, string &remote_path, string &last_modified, time_t &last_checked, string &md5, bm::bvector<> &bv, bm::word_t *tb=0)CSparseGraphprotected
x_Sync(TGraphCachePool &icache_pool)CSparseGraphprotected
x_WriteData(ICache &icache, const string &data_key, TSparseVector &sv)CSparseGraphprotected
x_WriteMap(ICache &icache, bm::word_t *tb=0)CSparseGraphprotected
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
~CSparseGraph()CSparseGraphinlinevirtual
Modified on Wed May 15 15:09:42 2024 by modify_doxy.py rev. 669887