Search Toolkit Book for CPopulation_data_Base
CPopulation_data_Base –. More...
#include <objects/seqfeat/Population_data_.hpp>
Inheritance diagram for CPopulation_data_Base:
Collaboration diagram for CPopulation_data_Base:
Public Types | |
| enum | EFlags { eFlags_is_default_population = 1 , eFlags_is_minor_allele = 2 , eFlags_is_rare_allele = 4 } |
| This field is an explicit bit-field Valid values should be a bitwise combination (= simple sum) of any of the values below. More... | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_population , e_genotype_frequency , e_chromosomes_tested , e_sample_ids , e_allele_frequency , e_flags } |
| typedef string | TPopulation |
| typedef double | TGenotype_frequency |
| typedef int | TChromosomes_tested |
| typedef list< CRef< CObject_id > > | TSample_ids |
| typedef double | TAllele_frequency |
| typedef int | TFlags |
| typedef Tparent::CMemberIndex< E_memberIndex, 7 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
Public Member Functions | |
| CPopulation_data_Base (void) | |
| virtual | ~CPopulation_data_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetPopulation (void) const |
| assayed population (e.g. More... | |
| bool | CanGetPopulation (void) const |
| Check if it is safe to call GetPopulation method. More... | |
| void | ResetPopulation (void) |
| Reset Population data member. More... | |
| const TPopulation & | GetPopulation (void) const |
| Get the Population member data. More... | |
| void | SetPopulation (const TPopulation &value) |
| Assign a value to Population data member. More... | |
| void | SetPopulation (TPopulation &&value) |
| TPopulation & | SetPopulation (void) |
| Assign a value to Population data member. More... | |
| bool | IsSetGenotype_frequency (void) const |
| Check if a value has been assigned to Genotype_frequency data member. More... | |
| bool | CanGetGenotype_frequency (void) const |
| Check if it is safe to call GetGenotype_frequency method. More... | |
| void | ResetGenotype_frequency (void) |
| Reset Genotype_frequency data member. More... | |
| TGenotype_frequency | GetGenotype_frequency (void) const |
| Get the Genotype_frequency member data. More... | |
| void | SetGenotype_frequency (TGenotype_frequency value) |
| Assign a value to Genotype_frequency data member. More... | |
| TGenotype_frequency & | SetGenotype_frequency (void) |
| Assign a value to Genotype_frequency data member. More... | |
| bool | IsSetChromosomes_tested (void) const |
| Check if a value has been assigned to Chromosomes_tested data member. More... | |
| bool | CanGetChromosomes_tested (void) const |
| Check if it is safe to call GetChromosomes_tested method. More... | |
| void | ResetChromosomes_tested (void) |
| Reset Chromosomes_tested data member. More... | |
| TChromosomes_tested | GetChromosomes_tested (void) const |
| Get the Chromosomes_tested member data. More... | |
| void | SetChromosomes_tested (TChromosomes_tested value) |
| Assign a value to Chromosomes_tested data member. More... | |
| TChromosomes_tested & | SetChromosomes_tested (void) |
| Assign a value to Chromosomes_tested data member. More... | |
| bool | IsSetSample_ids (void) const |
| Check if a value has been assigned to Sample_ids data member. More... | |
| bool | CanGetSample_ids (void) const |
| Check if it is safe to call GetSample_ids method. More... | |
| void | ResetSample_ids (void) |
| Reset Sample_ids data member. More... | |
| const TSample_ids & | GetSample_ids (void) const |
| Get the Sample_ids member data. More... | |
| TSample_ids & | SetSample_ids (void) |
| Assign a value to Sample_ids data member. More... | |
| bool | IsSetAllele_frequency (void) const |
| Check if a value has been assigned to Allele_frequency data member. More... | |
| bool | CanGetAllele_frequency (void) const |
| Check if it is safe to call GetAllele_frequency method. More... | |
| void | ResetAllele_frequency (void) |
| Reset Allele_frequency data member. More... | |
| TAllele_frequency | GetAllele_frequency (void) const |
| Get the Allele_frequency member data. More... | |
| void | SetAllele_frequency (TAllele_frequency value) |
| Assign a value to Allele_frequency data member. More... | |
| TAllele_frequency & | SetAllele_frequency (void) |
| Assign a value to Allele_frequency data member. More... | |
| bool | IsSetFlags (void) const |
| Check if a value has been assigned to Flags data member. More... | |
| bool | CanGetFlags (void) const |
| Check if it is safe to call GetFlags method. More... | |
| void | ResetFlags (void) |
| Reset Flags data member. More... | |
| TFlags | GetFlags (void) const |
| Get the Flags member data. More... | |
| void | SetFlags (TFlags value) |
| Assign a value to Flags data member. More... | |
| TFlags & | SetFlags (void) |
| Assign a value to Flags data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Static Public Member Functions | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EFlags (void) |
| Access to EFlags's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
Private Types | |
| typedef CSerialObject | Tparent |
Private Member Functions | |
| CPopulation_data_Base (const CPopulation_data_Base &) | |
| CPopulation_data_Base & | operator= (const CPopulation_data_Base &) |
Private Attributes | |
| Uint4 | m_set_State [1] |
| string | m_Population |
| double | m_Genotype_frequency |
| int | m_Chromosomes_tested |
| list< CRef< CObject_id > > | m_Sample_ids |
| double | m_Allele_frequency |
| int | m_Flags |
Additional Inherited Members | |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 77 of file Population_data_.hpp.
The documentation for this class was generated from the following files:
- include/objects/seqfeat/Population_data_.hpp
- src/objects/seqfeat/Population_data_.cpp
