NCBI C++ ToolKit
CPrimeCacheApplication Member List

This is the complete list of members for CPrimeCacheApplication, including all inherited members.

AddOnExitAction(TFunc func)CNcbiApplicationAPIinline
AppMain(int argc, const char *const *argv, const char *const *envp=0, EAppDiagStream diag=eDS_Default, const char *conf=NcbiEmptyCStr, const string &name=NcbiEmptyString)CNcbiApplicationAPI
AppStart(void)CNcbiApplicationAPIprotectedvirtual
AppStop(int exit_code)CNcbiApplicationAPIprotectedvirtual
CCacheBioseq classCPrimeCacheApplicationfriend
CNcbiApplication(const SBuildInfo &build_info=NCBI_SBUILDINFO_DEFAULT())CNcbiApplicationexplicit
CNcbiApplicationAPI(const SBuildInfo &build_info)CNcbiApplicationAPIexplicit
CPrimeCacheApplication()CPrimeCacheApplicationinline
DisableArgDescriptions(TDisableArgDesc disable=fDisableStdArgs)CNcbiApplicationAPIprotected
DryRun(void)CNcbiApplicationAPIvirtual
eAllExits enum valueCNcbiApplicationAPIprotected
EAppFlags enum nameCNcbiApplicationAPIprotected
EAppNameType enum nameCNcbiApplicationAPI
eBaseName enum valueCNcbiApplicationAPI
EDisableArgDesc enum nameCNcbiApplicationAPIprotected
eExceptionalExits enum valueCNcbiApplicationAPIprotected
EExitMode enum nameCNcbiApplicationAPIprotected
eFullName enum valueCNcbiApplicationAPI
EHideStdArgs enum nameCNcbiApplicationAPIprotected
eNoExits enum valueCNcbiApplicationAPIprotected
ePreparse_Continue enum valueCNcbiApplicationAPIprotected
ePreparse_Exit enum valueCNcbiApplicationAPIprotected
EPreparseArgs enum nameCNcbiApplicationAPIprotected
eRealName enum valueCNcbiApplicationAPI
EStdioSetup enum nameCNcbiApplicationAPIprotected
ExecuteOnExitActions()CNcbiApplicationAPIprotected
Exit(void)CPrimeCacheApplicationprivatevirtual
fBinaryCin enum valueCNcbiApplicationAPIprotected
fBinaryCout enum valueCNcbiApplicationAPIprotected
fDefault_CinBufferSize enum valueCNcbiApplicationAPIprotected
fDefault_SyncWithStdio enum valueCNcbiApplicationAPIprotected
fDisableStdArgs enum valueCNcbiApplicationAPIprotected
fHideAll enum valueCNcbiApplicationAPIprotected
fHideConffile enum valueCNcbiApplicationAPIprotected
fHideDryRun enum valueCNcbiApplicationAPIprotected
fHideFullHelp enum valueCNcbiApplicationAPIprotected
fHideFullVersion enum valueCNcbiApplicationAPIprotected
fHideHelp enum valueCNcbiApplicationAPIprotected
fHideLogfile enum valueCNcbiApplicationAPIprotected
fHideVersion enum valueCNcbiApplicationAPIprotected
fHideXmlHelp enum valueCNcbiApplicationAPIprotected
FindProgramExecutablePath(int argc, const char *const *argv, string *real_path=0)CNcbiApplicationAPIprotectedstatic
FinishedLoadingConfig(void) constCNcbiApplicationAPIinline
FlushDiag(CNcbiOstream *os, bool close_diag=false)CNcbiApplicationAPI
fNoSyncWithStdio enum valueCNcbiApplicationAPIprotected
fSkipSafeStaticDestroy enum valueCNcbiApplicationAPIprotected
GetAppName(EAppNameType name_type=eBaseName, int argc=0, const char *const *argv=NULL)CNcbiApplicationAPIstatic
GetArgDescriptions(void) constCNcbiApplicationAPIinlineprotected
GetArgs(void) constCNcbiApplicationAPIvirtual
GetArguments(void) constCNcbiApplicationAPIinline
GetConfig(void) constCNcbiApplicationAPIinline
GetConfig(void)CNcbiApplicationAPIinline
GetConfigPath(void) constCNcbiApplicationAPIinline
GetEnvironment(void) constCNcbiApplicationAPIinline
GetFullVersion(void) constCNcbiApplicationAPI
GetInstanceLock(void)CNcbiApplicationAPIprotectedstatic
GetInstanceMutex(void)CNcbiApplicationAPIstatic
GetPhoneHomePolicy() constCNcbiApplicationAPIinlineprotected
GetProgramDisplayName(void) constCNcbiApplicationAPIinline
GetProgramExecutablePath(EFollowLinks follow_links=eIgnoreLinks) constCNcbiApplicationAPIinline
GetRWConfig(void)CNcbiApplicationAPIinlineprotected
GetVersion(void) constCNcbiApplicationAPI
HasLoadedConfig(void) constCNcbiApplicationAPIinline
HideStdArgs(THideStdArgs hide_mask)CNcbiApplicationAPIprotected
Init(void)CPrimeCacheApplicationprivatevirtual
Instance(void)CNcbiApplicationstatic
InstanceGuard(void)CNcbiApplicationAPIstatic
IsDryRun(void) constCNcbiApplicationAPIinline
LoadConfig(CNcbiRegistry &reg, const string *conf, CNcbiRegistry::TFlags reg_flags)CNcbiApplicationAPIprotectedvirtual
LoadConfig(CNcbiRegistry &reg, const string *conf)CNcbiApplicationAPIprotectedvirtual
m_AppFlagsCNcbiApplicationAPIprivate
m_ArgDescCNcbiApplicationAPIprivate
m_ArgsCNcbiApplicationAPIprivate
m_ArgumentsCNcbiApplicationAPIprivate
m_CachedIdsCPrimeCacheApplicationprivate
m_CachePathCPrimeCacheApplicationprivate
m_CinBufferCNcbiApplicationAPIprivate
m_ConfigCNcbiApplicationAPIprivate
m_ConfigLoadedCNcbiApplicationAPIprivate
m_ConfigPathCNcbiApplicationAPIprivate
m_DefaultConfigCNcbiApplicationAPIprivate
m_DiagStreamCNcbiApplicationAPIprivate
m_DisableArgDescCNcbiApplicationAPIprivate
m_DryRunCNcbiApplicationAPIprivate
m_EnvironCNcbiApplicationAPIprivate
m_ExePathCNcbiApplicationAPIprivate
m_ExitCodeCNcbiApplicationAPIprivate
m_ExitCodeCondCNcbiApplicationAPIprivate
m_ExtractDeltaCPrimeCacheApplicationprivate
m_GenomeCPrimeCacheApplicationprivate
m_HideArgsCNcbiApplicationAPIprivate
m_id_typeCPrimeCacheApplicationprivate
m_InstanceCNcbiApplicationAPIprivatestatic
m_InstMolCPrimeCacheApplicationprivate
m_LogFileCNcbiApplicationAPIprivate
m_LogFileNameCNcbiApplicationAPImutableprivate
m_LogOptionsCNcbiApplicationAPIprivate
m_MainChunkCPrimeCacheApplicationprivate
m_MainIndexCPrimeCacheApplicationprivate
m_MaxDeltaLevelCPrimeCacheApplicationprivate
m_MolInfoCPrimeCacheApplicationprivate
m_OnExitActionsCNcbiApplicationAPIprivate
m_OrgsCPrimeCacheApplicationprivate
m_other_descsCPrimeCacheApplicationprivate
m_PhoneHomePolicyCNcbiApplicationAPIprivate
m_PhoneHomePolicy_OwnershipCNcbiApplicationAPIprivate
m_PreviousExecutionIdsCPrimeCacheApplicationprivate
m_PreviousExecutionRunsCPrimeCacheApplicationprivate
m_ProgramDisplayNameCNcbiApplicationAPIprivate
m_RealExePathCNcbiApplicationAPIprivate
m_SeqIdChunkCPrimeCacheApplicationprivate
m_SeqIdIndexCPrimeCacheApplicationprivate
m_SequenceTaxidsCPrimeCacheApplicationprivate
m_SequenceUniprotSourcesCPrimeCacheApplicationprivate
m_StdioFlagsCNcbiApplicationAPIprivate
m_StripInstMolCPrimeCacheApplicationprivate
m_VersionCNcbiApplicationAPIprivate
PreparseArgs(int argc, const char *const *argv)CNcbiApplicationAPIprotectedvirtual
ReloadConfig(CMetaRegistry::TFlags flags=CMetaRegistry::fReloadIfChanged, IRegistry::TFlags reg_flags=IRegistry::fWithNcbirc)CNcbiApplicationAPIinline
Run(void)CPrimeCacheApplicationprivatevirtual
SetAppFlags(TAppFlags flags)CNcbiApplicationAPIinlineprotected
SetEnvironment(void)CNcbiApplicationAPIinline
SetEnvironment(const string &name, const string &value)CNcbiApplicationAPI
SetExitCode(int exit_code, EExitMode when=eExceptionalExits)CNcbiApplicationAPIprotected
SetFullVersion(CRef< CVersionAPI > version)CNcbiApplicationAPIprotected
SetPhoneHomePolicy(IPhoneHomePolicy *policy, ENcbiOwnership ownership=eNoOwnership)CNcbiApplicationAPIprotected
SetProgramDisplayName(const string &app_name)CNcbiApplicationAPIprotected
SetStdioFlags(TStdioSetupFlags stdio_flags)CNcbiApplicationAPIprotected
SetupArgDescriptions(CArgDescriptions *arg_desc)CNcbiApplicationAPIprotectedvirtual
SetupDiag(EAppDiagStream diag)CNcbiApplicationAPIprotected
SetupDiag_AppSpecific(void)CNcbiApplicationAPIvirtual
SetVersion(const CVersionInfo &version)CNcbiApplicationAPIprotected
SetVersion(const CVersionInfo &version, const SBuildInfo &build_info)CNcbiApplicationAPIprotected
SetVersionByBuild(int major)CNcbiApplicationAPIprotected
TAppFlags typedefCNcbiApplicationAPIprotected
TDisableArgDesc typedefCNcbiApplicationAPIprotected
THideStdArgs typedefCNcbiApplicationAPIprotected
TStdioSetupFlags typedefCNcbiApplicationAPIprotected
x_AddDefaultArgs(void)CNcbiApplicationAPIprivate
x_CacheSeqEntry(CNcbiIstream &istr, CNcbiOstream &ostr_seqids, ESerialDataFormat serial_fmt, set< CSeq_id_Handle > &delta_ids, size_t &count)CPrimeCacheApplicationprivate
x_ExtractAndIndex(const CSeq_entry &entry, CAsnIndex::TTimestamp timestamp, CAsnIndex::TChunkId chunk_id, CAsnIndex::TOffset offset, CAsnIndex::TSize size)CPrimeCacheApplicationprivate
x_ExtractDelta(CBioseq_Handle bsh, set< CSeq_id_Handle > &delta_ids)CPrimeCacheApplicationprivate
x_HonorStandardSettings(IRegistry *reg=0)CNcbiApplicationAPIprivate
x_LogOptions(int event)CNcbiApplicationAPIprivate
x_Process_Fasta(CNcbiIstream &istr, CNcbiOstream &ostr_seqids)CPrimeCacheApplicationprivate
x_Process_Ids(const set< CSeq_id_Handle > &ids, CNcbiOstream &ostr_seqids, unsigned delta_level, size_t count)CPrimeCacheApplicationprivate
x_Process_SeqEntry(CNcbiIstream &istr, CNcbiOstream &ostr_seqids, ESerialDataFormat serial_fmt, set< CSeq_id_Handle > &delta_ids, size_t &count)CPrimeCacheApplicationprivate
x_Read_Ids(CNcbiIstream &istr, set< CSeq_id_Handle > &ids)CPrimeCacheApplicationprivate
x_ReadLogOptions()CNcbiApplicationAPIprivate
x_SetupStdio(void)CNcbiApplicationAPIprivate
x_SplitAndCacheSeqEntry(CNcbiIstream &istr, CNcbiOstream &ostr_seqids, ESerialDataFormat serial_fmt)CPrimeCacheApplicationprivate
x_StripSeqEntry(CScope &scope, CSeq_entry &entry, set< CSeq_id_Handle > &trimmed_bioseqs)CPrimeCacheApplicationprivate
x_TryInit(EAppDiagStream diag, const char *conf)CNcbiApplicationAPIprivate
x_TryMain(EAppDiagStream diag, const char *conf, int *exit_code, bool *got_exception)CNcbiApplicationAPIprivate
x_UpsertDescriptor(list< CRef< CSeqdesc > > &descs, CRef< CSeqdesc > new_desc)CPrimeCacheApplicationprivate
~CNcbiApplication(void)CNcbiApplicationvirtual
~CNcbiApplicationAPI(void)CNcbiApplicationAPIvirtual
Modified on Sat Apr 13 11:47:51 2024 by modify_doxy.py rev. 669887