NCBI C++ ToolKit
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Represents ASN.1 type PssmFinalData defined in file scoremat.asn

Search Toolkit Book for CPssmFinalData

CPssmFinalData –. More...

#include <objects/scoremat/PssmFinalData.hpp>

+ Inheritance diagram for CPssmFinalData:
+ Collaboration diagram for CPssmFinalData:

Public Member Functions

 CPssmFinalData (void)
 
 ~CPssmFinalData (void)
 
- Public Member Functions inherited from CPssmFinalData_Base
 CPssmFinalData_Base (void)
 
virtual ~CPssmFinalData_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetScores (void) const
 PSSM's scores Check if a value has been assigned to Scores data member. More...
 
bool CanGetScores (void) const
 Check if it is safe to call GetScores method. More...
 
void ResetScores (void)
 Reset Scores data member. More...
 
const TScoresGetScores (void) const
 Get the Scores member data. More...
 
TScoresSetScores (void)
 Assign a value to Scores data member. More...
 
bool IsSetLambda (void) const
 Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned to Lambda data member. More...
 
bool CanGetLambda (void) const
 Check if it is safe to call GetLambda method. More...
 
void ResetLambda (void)
 Reset Lambda data member. More...
 
TLambda GetLambda (void) const
 Get the Lambda member data. More...
 
void SetLambda (TLambda value)
 Assign a value to Lambda data member. More...
 
TLambdaSetLambda (void)
 Assign a value to Lambda data member. More...
 
bool IsSetKappa (void) const
 Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned to Kappa data member. More...
 
bool CanGetKappa (void) const
 Check if it is safe to call GetKappa method. More...
 
void ResetKappa (void)
 Reset Kappa data member. More...
 
TKappa GetKappa (void) const
 Get the Kappa member data. More...
 
void SetKappa (TKappa value)
 Assign a value to Kappa data member. More...
 
TKappaSetKappa (void)
 Assign a value to Kappa data member. More...
 
bool IsSetH (void) const
 Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned to H data member. More...
 
bool CanGetH (void) const
 Check if it is safe to call GetH method. More...
 
void ResetH (void)
 Reset H data member. More...
 
TH GetH (void) const
 Get the H member data. More...
 
void SetH (TH value)
 Assign a value to H data member. More...
 
THSetH (void)
 Assign a value to H data member. More...
 
bool IsSetScalingFactor (void) const
 scaling factor used to obtain more precision when building the PSSM. More...
 
bool CanGetScalingFactor (void) const
 Check if it is safe to call GetScalingFactor method. More...
 
void ResetScalingFactor (void)
 Reset ScalingFactor data member. More...
 
void SetDefaultScalingFactor (void)
 Assign default value to ScalingFactor data member. More...
 
TScalingFactor GetScalingFactor (void) const
 Get the ScalingFactor member data. More...
 
void SetScalingFactor (TScalingFactor value)
 Assign a value to ScalingFactor data member. More...
 
TScalingFactorSetScalingFactor (void)
 Assign a value to ScalingFactor data member. More...
 
bool IsSetLambdaUngapped (void) const
 Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned to LambdaUngapped data member. More...
 
bool CanGetLambdaUngapped (void) const
 Check if it is safe to call GetLambdaUngapped method. More...
 
void ResetLambdaUngapped (void)
 Reset LambdaUngapped data member. More...
 
TLambdaUngapped GetLambdaUngapped (void) const
 Get the LambdaUngapped member data. More...
 
void SetLambdaUngapped (TLambdaUngapped value)
 Assign a value to LambdaUngapped data member. More...
 
TLambdaUngappedSetLambdaUngapped (void)
 Assign a value to LambdaUngapped data member. More...
 
bool IsSetKappaUngapped (void) const
 Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned to KappaUngapped data member. More...
 
bool CanGetKappaUngapped (void) const
 Check if it is safe to call GetKappaUngapped method. More...
 
void ResetKappaUngapped (void)
 Reset KappaUngapped data member. More...
 
TKappaUngapped GetKappaUngapped (void) const
 Get the KappaUngapped member data. More...
 
void SetKappaUngapped (TKappaUngapped value)
 Assign a value to KappaUngapped data member. More...
 
TKappaUngappedSetKappaUngapped (void)
 Assign a value to KappaUngapped data member. More...
 
bool IsSetHUngapped (void) const
 Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned to HUngapped data member. More...
 
bool CanGetHUngapped (void) const
 Check if it is safe to call GetHUngapped method. More...
 
void ResetHUngapped (void)
 Reset HUngapped data member. More...
 
THUngapped GetHUngapped (void) const
 Get the HUngapped member data. More...
 
void SetHUngapped (THUngapped value)
 Assign a value to HUngapped data member. More...
 
THUngappedSetHUngapped (void)
 Assign a value to HUngapped data member. More...
 
bool IsSetWordScoreThreshold (void) const
 Word score threshold Check if a value has been assigned to WordScoreThreshold data member. More...
 
bool CanGetWordScoreThreshold (void) const
 Check if it is safe to call GetWordScoreThreshold method. More...
 
void ResetWordScoreThreshold (void)
 Reset WordScoreThreshold data member. More...
 
TWordScoreThreshold GetWordScoreThreshold (void) const
 Get the WordScoreThreshold member data. More...
 
void SetWordScoreThreshold (TWordScoreThreshold value)
 Assign a value to WordScoreThreshold data member. More...
 
TWordScoreThresholdSetWordScoreThreshold (void)
 Assign a value to WordScoreThreshold data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CPssmFinalData_Base Tparent
 

Private Member Functions

 CPssmFinalData (const CPssmFinalData &value)
 
CPssmFinalDataoperator= (const CPssmFinalData &value)
 

Additional Inherited Members

- Public Types inherited from CPssmFinalData_Base
enum class  E_memberIndex {
  e__allMandatory = 0 , e_scores , e_lambda , e_kappa ,
  e_h , e_scalingFactor , e_lambdaUngapped , e_kappaUngapped ,
  e_hUngapped , e_wordScoreThreshold
}
 
typedef list< intTScores
 
typedef double TLambda
 
typedef double TKappa
 
typedef double TH
 
typedef int TScalingFactor
 
typedef double TLambdaUngapped
 
typedef double TKappaUngapped
 
typedef double THUngapped
 
typedef double TWordScoreThreshold
 
typedef Tparent::CMemberIndex< E_memberIndex, 10 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CPssmFinalData –.

Definition at line 65 of file PssmFinalData.hpp.


The documentation for this class was generated from the following files:
Modified on Thu Feb 22 17:07:56 2024 by modify_doxy.py rev. 669887