NCBI C++ ToolKit
Classes | Public Member Functions | Static Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
CQualTableLoadManager Class Reference

Search Toolkit Book for CQualTableLoadManager

CTableFileLoadManager. More...

#include <gui/packages/pkg_sequence_edit/qual_table_load_manager.hpp>

+ Inheritance diagram for CQualTableLoadManager:
+ Collaboration diagram for CQualTableLoadManager:

Classes

class  CColumnIdPage
 
class  CDelimitersPage
 

Public Member Functions

 CQualTableLoadManager ()
 CQualTableLoadManager. More...
 
void SetTopLevelEntry (CSeq_entry_Handle seq_entry)
 
bool ShouldMakeMailReport ()
 
CAttribTableColumnIdPanelx_GetColumnIdPanel ()
 
IFileLoadPanelClient interface implementation
virtual string GetLabel () const
 
virtual wxString GetFormatWildcard () const
 return file wildcard for the format (example - "*.txt;*.tab" ) More...
 
virtual string GetFileLoaderId () const
 
IUILoadManager interface implementation
virtual void SetServiceLocator (IServiceLocator *srv_locator)
 Sets / unsets Service Locator. More...
 
virtual void SetParentWindow (wxWindow *parent)
 
virtual const IUIObjectGetDescriptor () const
 Returns the object describing this tool (UI meta data). More...
 
virtual void InitUI ()
 Initializes the Manager before using it in UI. More...
 
virtual void CleanUI ()
 CleanUI() is called after the host finished using the manager. More...
 
virtual wxPanel * GetCurrentPanel ()
 Return the panel corresponding to the current state of Tool Manager. More...
 
virtual bool CanDo (EAction action)
 Indicates whether given transition is possible in the current state. More...
 
virtual bool IsFinalState ()
 True if Tool Manager has reached its final state, i.e. More...
 
virtual bool IsCompletedState ()
 Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
 
virtual bool DoTransition (EAction action)
 Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
 
virtual IAppTaskGetTask ()
 Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
 
virtual IExecuteUnitGetExecuteUnit ()
 
virtual bool SingleFileLoader () const
 returns true if loader can handle only one file More...
 
virtual IWizardPageGetFirstPage ()
 Returns first options page (if any) of the tool to be shown in wizard dialog. More...
 
virtual void SetPrevPage (IWizardPage *prevPage)
 Sets a wizard page which should show before the first page of the tool. More...
 
virtual wxString GetFormatWildcard ()
 
virtual bool ValidateFilenames (const vector< wxString > &filenames)
 checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
 
virtual void SetFilenames (const vector< wxString > &filenames)
 initilize the manager with the given filenames More...
 
virtual void GetFilenames (vector< wxString > &filenames) const
 get actual filenames that will be opened More...
 
virtual bool IsInitialState ()
 return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
 
virtual bool RecognizeFormat (const wxString &filename)
 return true if the given file format is supported by this manager More...
 
virtual bool RecognizeFormat (CFormatGuess::EFormat fmt)
 return true if the given file format is supported by this manager More...
 
IExtension interface implementation
virtual string GetExtensionIdentifier () const
 returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
 
virtual string GetExtensionLabel () const
 returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...
 
IRegSettings interface implementation
virtual void SetRegistryPath (const string &path)
 
virtual void LoadSettings ()
 
virtual void SaveSettings () const
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from IFileFormatLoaderManager
virtual bool CanGuessFormat () const
 returns true if loader's format can be guessed More...
 
- Public Member Functions inherited from IUIToolManager
virtual wxPanel * GetMaxPanel ()
 Return the panel that occupies max size on display, to calculate dialog window size. More...
 
virtual IUIToolManagerGetAlternateToolManager ()
 If a transition fails, it may make sense to switch to a different tool manger When a tool manager identifies a more appropriate manager for a task, it returns it here, otherwise NULL. More...
 
virtual IWizardPageGetOptionsPage ()
 Returns page for tool options (long wizard path via "Options" button) More...
 
virtual void SetNextPage (IWizardPage *)
 Sets a wizard page which should show after the last page of the tool. More...
 
virtual void RestoreDefaults ()
 Restores the default options for the current panel. More...
 
virtual void ResetState ()
 
virtual bool UsesSingleOMScope ()
 
virtual ~IUIToolManager ()
 
- Public Member Functions inherited from IFileLoadPanelClient
virtual ~IFileLoadPanelClient ()
 
- Public Member Functions inherited from IToolWizard
virtual ~IToolWizard ()
 
virtual IWizardPageGetOptionsPage ()
 Returns page for tool options (long wizard path via "Options" button) More...
 
virtual void SetNextPage (IWizardPage *)
 Sets a wizard page which should show after the last page of the tool. More...
 
- Public Member Functions inherited from IExtension
virtual ~IExtension ()
 
- Public Member Functions inherited from IRegSettings
virtual ~IRegSettings ()
 

Static Public Member Functions

static string Id ()
 
static string Label ()
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Protected Member Functions

CAttribTableDelimitersPanelx_GetDelimitersPanel ()
 
void x_ConvertToSeqAnnot ()
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Protected Attributes

CUIObject m_Descr
 
IServiceLocatorm_SrvLocator
 
wxWindow * m_ParentWindow
 
string m_RegPath
 
vector< wxString > m_FileNames
 
CRef< CTableImportDataSourcem_ImportedTableData
 Data is loaded initially into this table for delimiter processing. More...
 
CRef< CTableAnnotDataSourcem_AnnotTableData
 After delimiters and column types are identified, table is copied to this table for saving as asn and data (feature) transforms. More...
 
CAttribTableDelimitersPanelm_TableDelimitersPanel
 
CAttribTableColumnIdPanelm_TableColumnIdPanel
 
CSeq_entry_Handle m_TopSeqEntry
 
CQualTableLoadManager::CDelimitersPage m_DelimitersPage
 
CQualTableLoadManager::CColumnIdPage m_ColumnIdPage
 
IWizardPagem_CurrentPage
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Public Types inherited from IUIToolManager
enum  EAction { eBack = 0 , eNext , eSkip }
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 

Detailed Description

CTableFileLoadManager.

CQualTableLoadManager - a Load Manager for Sequin qualifier table files. This class implements IFileFormatLoaderManager interface in order to work with generic Format LoadManager.

Definition at line 64 of file qual_table_load_manager.hpp.

Constructor & Destructor Documentation

◆ CQualTableLoadManager()

CQualTableLoadManager::CQualTableLoadManager ( )

Member Function Documentation

◆ CanDo()

bool CQualTableLoadManager::CanDo ( EAction  action)
virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 268 of file qual_table_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, IUIToolManager::eNext, IsInitialState(), and m_CurrentPage.

◆ CleanUI()

void CQualTableLoadManager::CleanUI ( )
virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 174 of file qual_table_load_manager.cpp.

References m_CurrentPage, m_DelimitersPage, m_TableColumnIdPanel, m_TableDelimitersPanel, and NULL.

◆ DoTransition()

bool CQualTableLoadManager::DoTransition ( EAction  action)
virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 297 of file qual_table_load_manager.cpp.

References _ASSERT, IWizardPage::CanLeavePage(), IUIToolManager::eBack, IUIToolManager::eNext, IWizardPage::GetNextPage(), IWizardPage::GetPrevPage(), m_ColumnIdPage, and m_CurrentPage.

◆ GetCurrentPanel()

wxPanel * CQualTableLoadManager::GetCurrentPanel ( )
virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 182 of file qual_table_load_manager.cpp.

References IWizardPage::GetPanel(), and m_CurrentPage.

◆ GetDescriptor()

const IUIObject & CQualTableLoadManager::GetDescriptor ( ) const
virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 162 of file qual_table_load_manager.cpp.

References m_Descr.

◆ GetExecuteUnit()

IExecuteUnit * CQualTableLoadManager::GetExecuteUnit ( )
virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 330 of file qual_table_load_manager.cpp.

References m_AnnotTableData, and m_FileNames.

◆ GetExtensionIdentifier()

string CQualTableLoadManager::GetExtensionIdentifier ( ) const
virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 381 of file qual_table_load_manager.cpp.

◆ GetExtensionLabel()

string CQualTableLoadManager::GetExtensionLabel ( ) const
virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 388 of file qual_table_load_manager.cpp.

◆ GetFileLoaderId()

virtual string CQualTableLoadManager::GetFileLoaderId ( ) const
inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 81 of file qual_table_load_manager.hpp.

References Id().

◆ GetFilenames()

void CQualTableLoadManager::GetFilenames ( vector< wxString > &  filenames) const
virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 358 of file qual_table_load_manager.cpp.

References filenames, and m_FileNames.

◆ GetFirstPage()

virtual IWizardPage* CQualTableLoadManager::GetFirstPage ( )
inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 99 of file qual_table_load_manager.hpp.

References m_DelimitersPage.

◆ GetFormatWildcard() [1/2]

wxString CQualTableLoadManager::GetFormatWildcard ( )
virtual

◆ GetFormatWildcard() [2/2]

wxString CQualTableLoadManager::GetFormatWildcard ( ) const
virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 141 of file qual_table_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), and CFileExtensions::kAllFiles.

◆ GetLabel()

string CQualTableLoadManager::GetLabel ( void  ) const
virtual

Implements IFileLoadPanelClient.

Definition at line 136 of file qual_table_load_manager.cpp.

References CUIObject::GetLabel(), and m_Descr.

◆ GetTask()

IAppTask * CQualTableLoadManager::GetTask ( )
virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 325 of file qual_table_load_manager.cpp.

◆ Id()

static string CQualTableLoadManager::Id ( )
inlinestatic

Definition at line 127 of file qual_table_load_manager.hpp.

Referenced by GetFileLoaderId().

◆ InitUI()

void CQualTableLoadManager::InitUI ( )
virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 168 of file qual_table_load_manager.cpp.

References m_CurrentPage, and m_DelimitersPage.

◆ IsCompletedState()

bool CQualTableLoadManager::IsCompletedState ( )
virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the Completed state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 291 of file qual_table_load_manager.cpp.

References m_CurrentPage.

◆ IsFinalState()

bool CQualTableLoadManager::IsFinalState ( )
virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether Finish or Next button needs to be shown.

Implements IUIToolManager.

Definition at line 285 of file qual_table_load_manager.cpp.

References IWizardPage::GetNextPage(), and m_CurrentPage.

◆ IsInitialState()

bool CQualTableLoadManager::IsInitialState ( )
virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 363 of file qual_table_load_manager.cpp.

References m_CurrentPage, and m_DelimitersPage.

Referenced by CanDo().

◆ Label()

static string CQualTableLoadManager::Label ( )
inlinestatic

Definition at line 128 of file qual_table_load_manager.hpp.

◆ LoadSettings()

void CQualTableLoadManager::LoadSettings ( )
virtual

Implements IRegSettings.

Definition at line 213 of file qual_table_load_manager.cpp.

◆ RecognizeFormat() [1/2]

bool CQualTableLoadManager::RecognizeFormat ( CFormatGuess::EFormat  fmt)
virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 376 of file qual_table_load_manager.cpp.

References CFormatGuess::eTable.

◆ RecognizeFormat() [2/2]

bool CQualTableLoadManager::RecognizeFormat ( const wxString &  filename)
virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 369 of file qual_table_load_manager.cpp.

References CFileExtensions::kTable, and CFileExtensions::RecognizeExtension().

◆ SaveSettings()

void CQualTableLoadManager::SaveSettings ( ) const
virtual

Implements IRegSettings.

Definition at line 208 of file qual_table_load_manager.cpp.

◆ SetFilenames()

void CQualTableLoadManager::SetFilenames ( const vector< wxString > &  filenames)
virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 353 of file qual_table_load_manager.cpp.

References filenames, and m_FileNames.

Referenced by CSequenceEditingEventHandler::TableReaderClipboard(), and CEditingBtnsPanel::TableReaderFromClipboard().

◆ SetParentWindow()

void CQualTableLoadManager::SetParentWindow ( wxWindow *  parent)
virtual

Implements IToolWizard.

Definition at line 156 of file qual_table_load_manager.cpp.

References m_ParentWindow.

◆ SetPrevPage()

virtual void CQualTableLoadManager::SetPrevPage ( IWizardPage )
inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 100 of file qual_table_load_manager.hpp.

References m_DelimitersPage, and CWizardPage::SetPrevPage().

◆ SetRegistryPath()

void CQualTableLoadManager::SetRegistryPath ( const string path)
virtual

Implements IRegSettings.

Definition at line 203 of file qual_table_load_manager.cpp.

References m_RegPath.

◆ SetServiceLocator()

void CQualTableLoadManager::SetServiceLocator ( IServiceLocator srv_locator)
virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 151 of file qual_table_load_manager.cpp.

References m_SrvLocator.

Referenced by COrganismInfoPanel::OnImportSrcTable(), CEditingBtnsPanel::TableReader(), CSequenceEditingEventHandler::TableReader(), CSequenceEditingEventHandler::TableReaderClipboard(), and CEditingBtnsPanel::TableReaderFromClipboard().

◆ SetTopLevelEntry()

void CQualTableLoadManager::SetTopLevelEntry ( CSeq_entry_Handle  seq_entry)
inline

◆ ShouldMakeMailReport()

bool CQualTableLoadManager::ShouldMakeMailReport ( )

◆ SingleFileLoader()

virtual bool CQualTableLoadManager::SingleFileLoader ( ) const
inlinevirtual

returns true if loader can handle only one file

Reimplemented from IFileFormatLoaderManager.

Definition at line 98 of file qual_table_load_manager.hpp.

◆ ValidateFilenames()

bool CQualTableLoadManager::ValidateFilenames ( const vector< wxString > &  filenames)
virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 341 of file qual_table_load_manager.cpp.

References filenames, CAttribTableDelimitersPanel::PreviewData(), CAttribTableDelimitersPanel::SetPreviewFileName(), and x_GetDelimitersPanel().

◆ x_ConvertToSeqAnnot()

void CQualTableLoadManager::x_ConvertToSeqAnnot ( )
protected

◆ x_GetColumnIdPanel()

CAttribTableColumnIdPanel * CQualTableLoadManager::x_GetColumnIdPanel ( )

◆ x_GetDelimitersPanel()

CAttribTableDelimitersPanel * CQualTableLoadManager::x_GetDelimitersPanel ( )
protected

Member Data Documentation

◆ m_AnnotTableData

CRef<CTableAnnotDataSource> CQualTableLoadManager::m_AnnotTableData
protected

After delimiters and column types are identified, table is copied to this table for saving as asn and data (feature) transforms.

Definition at line 149 of file qual_table_load_manager.hpp.

Referenced by GetExecuteUnit(), and x_ConvertToSeqAnnot().

◆ m_ColumnIdPage

CQualTableLoadManager::CColumnIdPage CQualTableLoadManager::m_ColumnIdPage
protected

Referenced by DoTransition().

◆ m_CurrentPage

IWizardPage* CQualTableLoadManager::m_CurrentPage
protected

◆ m_DelimitersPage

CQualTableLoadManager::CDelimitersPage CQualTableLoadManager::m_DelimitersPage
protected

◆ m_Descr

CUIObject CQualTableLoadManager::m_Descr
protected

Definition at line 134 of file qual_table_load_manager.hpp.

Referenced by CQualTableLoadManager(), GetDescriptor(), and GetLabel().

◆ m_FileNames

vector<wxString> CQualTableLoadManager::m_FileNames
protected

◆ m_ImportedTableData

CRef<CTableImportDataSource> CQualTableLoadManager::m_ImportedTableData
protected

Data is loaded initially into this table for delimiter processing.

Definition at line 145 of file qual_table_load_manager.hpp.

Referenced by x_ConvertToSeqAnnot(), x_GetColumnIdPanel(), and x_GetDelimitersPanel().

◆ m_ParentWindow

wxWindow* CQualTableLoadManager::m_ParentWindow
protected

◆ m_RegPath

string CQualTableLoadManager::m_RegPath
protected

◆ m_SrvLocator

IServiceLocator* CQualTableLoadManager::m_SrvLocator
protected

Definition at line 135 of file qual_table_load_manager.hpp.

Referenced by SetServiceLocator(), and x_GetColumnIdPanel().

◆ m_TableColumnIdPanel

CAttribTableColumnIdPanel* CQualTableLoadManager::m_TableColumnIdPanel
protected

Definition at line 152 of file qual_table_load_manager.hpp.

Referenced by CleanUI(), and x_GetColumnIdPanel().

◆ m_TableDelimitersPanel

CAttribTableDelimitersPanel* CQualTableLoadManager::m_TableDelimitersPanel
protected

Definition at line 151 of file qual_table_load_manager.hpp.

Referenced by CleanUI(), and x_GetDelimitersPanel().

◆ m_TopSeqEntry

CSeq_entry_Handle CQualTableLoadManager::m_TopSeqEntry
protected

Definition at line 154 of file qual_table_load_manager.hpp.

Referenced by SetTopLevelEntry(), and x_GetColumnIdPanel().


The documentation for this class was generated from the following files:
Modified on Sat Dec 09 04:45:50 2023 by modify_doxy.py rev. 669887