CRCache Class Reference

Search Toolkit Book for CRCache

Collaboration diagram for CRCache:

Classes
class	CDataPool
class	CRVPool
struct	SDataItem

Public Types
typedef CDbIndex::TSeqNum	TSeqNum

Public Member Functions
	CRCache (Uint4 max_results_per_query)
void	update (TSeqNum query, CSRSearch::TResults &results, const string &idstr1, const string &idstr2)
void	updateSIdMap (const vector< string > &idmap, TSeqNum start)
const vector< string > &	getSIdMap () const
void	dump (CNcbiOstream &ostream)
CSRSearch::ELevel	getLevel1 (TSeqNum q)
CSRSearch::ELevel	getLevel2 (TSeqNum q)
Uint4	getNRes1 (TSeqNum q)
Uint4	getNRes2 (TSeqNum q)

Private Attributes
Uint4	max_res_
CDataPool	data_pool
CRVPool	rv_pool
vector< string >	idmap1
vector< string >	idmap2
vector< string >	sidmap

Detailed Description

Definition at line 58 of file srsearch_app.cpp.

Member Typedef Documentation

TSeqNum

typedef CDbIndex::TSeqNum CRCache::TSeqNum

Definition at line 62 of file srsearch_app.cpp.

Constructor & Destructor Documentation

CRCache()

CRCache::CRCache ( Uint4  max_results_per_query )

inline

Definition at line 76 of file srsearch_app.cpp.

Member Function Documentation

dump()

void CRCache::dump

(

CNcbiOstream &

ostream

)

Definition at line 225 of file srsearch_app.cpp.

References data, data_pool, i, PrintResults(), sidmap, and CRCache::CDataPool::size().

Referenced by CSRSearchApplication::Run().

getLevel1()

CSRSearch::ELevel CRCache::getLevel1 ( TSeqNum  q )

inline

Definition at line 101 of file srsearch_app.cpp.

References data_pool.

Referenced by CSRSearchApplication::Run().

getLevel2()

CSRSearch::ELevel CRCache::getLevel2 ( TSeqNum  q )

inline

Definition at line 104 of file srsearch_app.cpp.

References data_pool.

Referenced by CSRSearchApplication::Run().

getNRes1()

Uint4 CRCache::getNRes1 ( TSeqNum  q )

inline

Definition at line 107 of file srsearch_app.cpp.

References data_pool, and r().

Referenced by CSRSearchApplication::Run().

getNRes2()

Uint4 CRCache::getNRes2 ( TSeqNum  q )

inline

Definition at line 113 of file srsearch_app.cpp.

References data_pool, and r().

Referenced by CSRSearchApplication::Run().

getSIdMap()

const vector< string >& CRCache::getSIdMap ( ) const

inline

Definition at line 97 of file srsearch_app.cpp.

References sidmap.

Referenced by CSRSearchApplication::Run().

update()

void CRCache::update	(	TSeqNum	query,
		CSRSearch::TResults &	results,
		const string &	idstr1,
		const string &	idstr2
	)

Definition at line 241 of file srsearch_app.cpp.

References data, data_pool, i, CSRSearch::SResults::level_1, CSRSearch::SResults::level_2, CRCache::CRVPool::newItem(), CSRSearch::SResults::nres_1, query, CSRSearch::SResults::res, rv_pool, and CSRSearch::SE.

Referenced by CSRSearchApplication::Run().

updateSIdMap()

void CRCache::updateSIdMap ( const vector< string > &  idmap, TSeqNum  start  )

inline

Definition at line 86 of file srsearch_app.cpp.

References i, and sidmap.

Referenced by CSRSearchApplication::Run().

Member Data Documentation

data_pool

CDataPool CRCache::data_pool

private

Definition at line 217 of file srsearch_app.cpp.

Referenced by dump(), getLevel1(), getLevel2(), getNRes1(), getNRes2(), and update().

idmap1

vector< string > CRCache::idmap1

private

Definition at line 219 of file srsearch_app.cpp.

idmap2

vector< string > CRCache::idmap2

private

Definition at line 220 of file srsearch_app.cpp.

max_res_

Uint4 CRCache::max_res_

private

Definition at line 216 of file srsearch_app.cpp.

rv_pool

CRVPool CRCache::rv_pool

private

Definition at line 218 of file srsearch_app.cpp.

Referenced by update().

sidmap

vector< string > CRCache::sidmap

private

Definition at line 221 of file srsearch_app.cpp.

Referenced by dump(), getSIdMap(), and updateSIdMap().

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The documentation for this class was generated from the following file:

• src/algo/blast/dbindex_search/srsearch/srsearch_app.cpp