#include <objtools/readers/bed_reader.hpp>

Collaboration diagram for CRawBedRecord:

Public Member Functions
	CRawBedRecord ()

virtual	~CRawBedRecord ()

void	SetInterval (CSeq_id &id, unsigned int start, unsigned int stop, ENa_strand strand)

void	SetScore (unsigned int score)

void	Dump (CNcbiOstream &ostr) const

Public Attributes
CRef< CSeq_interval >	m_pInterval

int	m_score

Detailed Description

Definition at line 50 of file bed_reader.hpp.

Constructor & Destructor Documentation

◆ CRawBedRecord()

CRawBedRecord::CRawBedRecord ( )

inline

Definition at line 54 of file bed_reader.hpp.

◆ ~CRawBedRecord()

virtual CRawBedRecord::~CRawBedRecord ( )

inlinevirtual

Definition at line 56 of file bed_reader.hpp.

Member Function Documentation

◆ Dump()

void CRawBedRecord::Dump ( CNcbiOstream & ostr ) const

Definition at line 206 of file bed_reader.cpp.

References eNa_strand_minus.

◆ SetInterval()

void CRawBedRecord::SetInterval	(	CSeq_id &	id,
		unsigned int	start,
		unsigned int	stop,
		ENa_strand	strand
	)

Definition at line 181 of file bed_reader.cpp.

References m_pInterval, CRef< C, Locker >::Reset(), CSeq_interval_Base::SetFrom(), CSeq_interval_Base::SetId(), CSeq_interval_Base::SetStrand(), and CSeq_interval_Base::SetTo().

Referenced by CBedReader::xReadBedRecordRaw().

◆ SetScore()

void CRawBedRecord::SetScore ( unsigned int score )

Definition at line 197 of file bed_reader.cpp.

References m_score.

Referenced by CBedReader::xReadBedRecordRaw().

Member Data Documentation

◆ m_pInterval

CRef<CSeq_interval> CRawBedRecord::m_pInterval

Definition at line 71 of file bed_reader.hpp.

Referenced by SetInterval().

◆ m_score

int CRawBedRecord::m_score

Definition at line 72 of file bed_reader.hpp.

Referenced by SetScore().

The documentation for this class was generated from the following files:

include/objtools/readers/bed_reader.hpp
src/objtools/readers/bed_reader.cpp

Public Member Functions

Public Attributes