Search Toolkit Book for CRs_Base::C_Validation::C_Attlist
#include <objects/docsum/Rs_.hpp>
Inheritance diagram for CRs_Base::C_Validation::C_Attlist:
Collaboration diagram for CRs_Base::C_Validation::C_Attlist:
Public Types | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_byCluster , e_byFrequency , e_byOtherPop , e_by2Hit2Allele , e_byHapMap , e_by1000G , e_suspect } |
| typedef bool | TByCluster |
| typedef bool | TByFrequency |
| typedef bool | TByOtherPop |
| typedef bool | TBy2Hit2Allele |
| typedef bool | TByHapMap |
| typedef bool | TBy1000G |
| typedef bool | TSuspect |
| typedef Tparent::CMemberIndex< E_memberIndex, 8 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
Public Member Functions | |
| C_Attlist (void) | |
| ~C_Attlist (void) | |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetByCluster (void) const |
| at least one subsnp in cluster has frequency data submitted Check if a value has been assigned to ByCluster data member. More... | |
| bool | CanGetByCluster (void) const |
| Check if it is safe to call GetByCluster method. More... | |
| void | ResetByCluster (void) |
| Reset ByCluster data member. More... | |
| TByCluster | GetByCluster (void) const |
| Get the ByCluster member data. More... | |
| void | SetByCluster (TByCluster value) |
| Assign a value to ByCluster data member. More... | |
| TByCluster & | SetByCluster (void) |
| Assign a value to ByCluster data member. More... | |
| bool | IsSetByFrequency (void) const |
| Validated by allele frequency Check if a value has been assigned to ByFrequency data member. More... | |
| bool | CanGetByFrequency (void) const |
| Check if it is safe to call GetByFrequency method. More... | |
| void | ResetByFrequency (void) |
| Reset ByFrequency data member. More... | |
| TByFrequency | GetByFrequency (void) const |
| Get the ByFrequency member data. More... | |
| void | SetByFrequency (TByFrequency value) |
| Assign a value to ByFrequency data member. More... | |
| TByFrequency & | SetByFrequency (void) |
| Assign a value to ByFrequency data member. More... | |
| bool | IsSetByOtherPop (void) const |
| Check if a value has been assigned to ByOtherPop data member. More... | |
| bool | CanGetByOtherPop (void) const |
| Check if it is safe to call GetByOtherPop method. More... | |
| void | ResetByOtherPop (void) |
| Reset ByOtherPop data member. More... | |
| TByOtherPop | GetByOtherPop (void) const |
| Get the ByOtherPop member data. More... | |
| void | SetByOtherPop (TByOtherPop value) |
| Assign a value to ByOtherPop data member. More... | |
| TByOtherPop & | SetByOtherPop (void) |
| Assign a value to ByOtherPop data member. More... | |
| bool | IsSetBy2Hit2Allele (void) const |
| cluster has 2+ submissions, with 1+ submissions assayed with a non-computational method Check if a value has been assigned to By2Hit2Allele data member. More... | |
| bool | CanGetBy2Hit2Allele (void) const |
| Check if it is safe to call GetBy2Hit2Allele method. More... | |
| void | ResetBy2Hit2Allele (void) |
| Reset By2Hit2Allele data member. More... | |
| TBy2Hit2Allele | GetBy2Hit2Allele (void) const |
| Get the By2Hit2Allele member data. More... | |
| void | SetBy2Hit2Allele (TBy2Hit2Allele value) |
| Assign a value to By2Hit2Allele data member. More... | |
| TBy2Hit2Allele & | SetBy2Hit2Allele (void) |
| Assign a value to By2Hit2Allele data member. More... | |
| bool | IsSetByHapMap (void) const |
| Validated by HapMap Project Check if a value has been assigned to ByHapMap data member. More... | |
| bool | CanGetByHapMap (void) const |
| Check if it is safe to call GetByHapMap method. More... | |
| void | ResetByHapMap (void) |
| Reset ByHapMap data member. More... | |
| TByHapMap | GetByHapMap (void) const |
| Get the ByHapMap member data. More... | |
| void | SetByHapMap (TByHapMap value) |
| Assign a value to ByHapMap data member. More... | |
| TByHapMap & | SetByHapMap (void) |
| Assign a value to ByHapMap data member. More... | |
| bool | IsSetBy1000G (void) const |
| Validated by 1000 Genomes Project Check if a value has been assigned to By1000G data member. More... | |
| bool | CanGetBy1000G (void) const |
| Check if it is safe to call GetBy1000G method. More... | |
| void | ResetBy1000G (void) |
| Reset By1000G data member. More... | |
| TBy1000G | GetBy1000G (void) const |
| Get the By1000G member data. More... | |
| void | SetBy1000G (TBy1000G value) |
| Assign a value to By1000G data member. More... | |
| TBy1000G & | SetBy1000G (void) |
| Assign a value to By1000G data member. More... | |
| bool | IsSetSuspect (void) const |
| Suspected to be false SNP Check if a value has been assigned to Suspect data member. More... | |
| bool | CanGetSuspect (void) const |
| Check if it is safe to call GetSuspect method. More... | |
| void | ResetSuspect (void) |
| Reset Suspect data member. More... | |
| TSuspect | GetSuspect (void) const |
| Get the Suspect member data. More... | |
| void | SetSuspect (TSuspect value) |
| Assign a value to Suspect data member. More... | |
| TSuspect & | SetSuspect (void) |
| Assign a value to Suspect data member. More... | |
| void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CSerialObject | Tparent |
Private Member Functions | |
| C_Attlist (const C_Attlist &) | |
| C_Attlist & | operator= (const C_Attlist &) |
Private Attributes | |
| Uint4 | m_set_State [1] |
| bool | m_ByCluster |
| bool | m_ByFrequency |
| bool | m_ByOtherPop |
| bool | m_By2Hit2Allele |
| bool | m_ByHapMap |
| bool | m_By1000G |
| bool | m_Suspect |
Additional Inherited Members | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
The documentation for this class was generated from the following files:
