This class encapsulates the dusting functionality of winmask. More...

#include "win_mask_sdust_masker.hpp"
(Private to src/app/winmasker.)

Collaboration diagram for CSDustMasker:

Public Types
typedef CSeqMasker::TMaskedInterval	TMaskedInterval
	Type representing a masked subsequence of a sequence. More...

typedef CSeqMasker::TMaskList	TMaskList
	Type representing a list of masked segments. More...

Public Member Functions
	CSDustMasker (Uint4 window, Uint4 level, Uint4 linker)
	Object constructor. More...

	~CSDustMasker ()
	Object destructor. More...

TMaskList *	operator() (const objects::CSeqVector &data, const TMaskList &exclude_ranges)
	Function performing the actual dusting. More...

Private Attributes
Uint4	window

CSymDustMasker	duster_

Detailed Description

This class encapsulates the dusting functionality of winmask.

Definition at line 49 of file win_mask_sdust_masker.hpp.

Member Typedef Documentation

◆ TMaskedInterval

typedef CSeqMasker::TMaskedInterval CSDustMasker::TMaskedInterval

Type representing a masked subsequence of a sequence.

Definition at line 54 of file win_mask_sdust_masker.hpp.

◆ TMaskList

typedef CSeqMasker::TMaskList CSDustMasker::TMaskList

Type representing a list of masked segments.

Definition at line 57 of file win_mask_sdust_masker.hpp.

Constructor & Destructor Documentation

◆ CSDustMasker()

CSDustMasker::CSDustMasker	(	Uint4	window,
		Uint4	level,
		Uint4	linker
	)

Object constructor.

Parameters

window	dust window
level	dust level
linker	dust linker

Definition at line 67 of file win_mask_sdust_masker.cpp.

◆ ~CSDustMasker()

CSDustMasker::~CSDustMasker ( )

Object destructor.

Definition at line 72 of file win_mask_sdust_masker.cpp.

Member Function Documentation

◆ operator()()

CSDustMasker::TMaskList * CSDustMasker::operator()	(	const objects::CSeqVector &	data,
		const TMaskList &	exclude_ranges
	)

Function performing the actual dusting.

Parameters

data	sequence data in IUPACNA format

Returns: pointer to a list of dusted sequences

Definition at line 75 of file win_mask_sdust_masker.cpp.

References data, duster_, result, and window.

Member Data Documentation

◆ duster_

CSymDustMasker CSDustMasker::duster_

private

Definition at line 89 of file win_mask_sdust_masker.hpp.

Referenced by operator()().

◆ window

Uint4 CSDustMasker::window