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CSGAlnOtherScore Class Reference

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#include <gui/widgets/seq_graphic/alignment_other_score.hpp>

+ Inheritance diagram for CSGAlnOtherScore:
+ Collaboration diagram for CSGAlnOtherScore:

Classes

class  CScoreCacheIterator
 

Public Member Functions

 CSGAlnOtherScore (CScoreCache &cache)
 
CScoreCacheGetScoreCache ()
 
ISGAlnScore interface implementation
virtual void CalculateScores ()
 CAlignOhterScore. More...
 
virtual bool HasScores () const
 
virtual IAlnScoreIteratorGetScoreIterator (int row) const
 
virtual CRgbaColor GetColorForScore (float score, IScoringMethod::EColorType type) const
 
virtual int GetSupportedColorTypes () const
 
virtual bool IsAverageable () const
 
virtual bool IsCacheable () const
 
virtual const stringGetScoringMethod () const
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from ISGAlnScore
virtual ~ISGAlnScore ()
 

Static Public Member Functions

static const stringGetScoreName ()
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Private Attributes

CRef< CScoreCachem_ScoreCache
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 42 of file alignment_other_score.hpp.

Constructor & Destructor Documentation

◆ CSGAlnOtherScore()

CSGAlnOtherScore::CSGAlnOtherScore ( CScoreCache cache)
inline

Definition at line 86 of file alignment_other_score.hpp.

Member Function Documentation

◆ CalculateScores()

void CSGAlnOtherScore::CalculateScores ( )
virtual

CAlignOhterScore.

Implements ISGAlnScore.

Definition at line 41 of file alignment_other_score.cpp.

References CScoreCache::CalculateScores(), and m_ScoreCache.

◆ GetColorForScore()

CRgbaColor CSGAlnOtherScore::GetColorForScore ( float  score,
IScoringMethod::EColorType  type 
) const
virtual

Implements ISGAlnScore.

Definition at line 59 of file alignment_other_score.cpp.

References CScoreCache::GetColorForScore(), and m_ScoreCache.

◆ GetScoreCache()

CScoreCache& CSGAlnOtherScore::GetScoreCache ( )
inline

Definition at line 101 of file alignment_other_score.hpp.

References m_ScoreCache.

Referenced by CSGAlignmentDS::InitAlignScoreCache().

◆ GetScoreIterator()

IAlnScoreIterator * CSGAlnOtherScore::GetScoreIterator ( int  row) const
virtual

Implements ISGAlnScore.

Definition at line 53 of file alignment_other_score.cpp.

References CScoreCache::GetScores(), and m_ScoreCache.

◆ GetScoreName()

const string & CSGAlnOtherScore::GetScoreName ( )
static

Definition at line 90 of file alignment_other_score.cpp.

Referenced by GetScoringMethod().

◆ GetScoringMethod()

const string & CSGAlnOtherScore::GetScoringMethod ( ) const
virtual

Implements ISGAlnScore.

Definition at line 84 of file alignment_other_score.cpp.

References GetScoreName().

◆ GetSupportedColorTypes()

int CSGAlnOtherScore::GetSupportedColorTypes ( ) const
virtual

◆ HasScores()

bool CSGAlnOtherScore::HasScores ( ) const
virtual

◆ IsAverageable()

bool CSGAlnOtherScore::IsAverageable ( ) const
virtual

◆ IsCacheable()

bool CSGAlnOtherScore::IsCacheable ( ) const
virtual

Implements ISGAlnScore.

Definition at line 78 of file alignment_other_score.cpp.

Member Data Documentation

◆ m_ScoreCache

CRef<CScoreCache> CSGAlnOtherScore::m_ScoreCache
private

The documentation for this class was generated from the following files:
Modified on Thu Dec 07 10:10:28 2023 by modify_doxy.py rev. 669887