CSRSearch::CResCache Class Reference

Search Toolkit Book for CSRSearch::CResCache

#include <algo/blast/dbindex_search/sr_search.hpp>

Public Member Functions
void	init (Uint4 sz)
bool	is_set (Uint4 idx, bool fw_strand) const
void	set (Uint4 idx, bool fw_strand)
TSRResults &	at (Uint4 idx, bool fw_strand)

Private Member Functions
Uint4	size ()
void	resize (Uint4 new_sz)

Private Attributes
vector< Uint1 >	f_ind_
vector< Uint1 >	r_ind_
vector< TSRResults >	f_res_cache_
vector< TSRResults >	r_res_cache_

Detailed Description

Definition at line 179 of file sr_search.hpp.

Member Function Documentation

at()

TSRResults& CSRSearch::CResCache::at ( Uint4  idx, bool  fw_strand  )

inline

Definition at line 233 of file sr_search.hpp.

Referenced by CSRSearch_Impl< index_t >::searchOneMismatch(), and CSRSearch_Impl< index_t >::setResults4Idx().

init()

void CSRSearch::CResCache::init ( Uint4  sz )

inline

Definition at line 211 of file sr_search.hpp.

References pythonpp::resize().

Referenced by CSRSearch_Impl< index_t >::search().

is_set()

bool CSRSearch::CResCache::is_set ( Uint4  idx, bool  fw_strand  ) const

inline

Definition at line 218 of file sr_search.hpp.

References bool.

Referenced by CSRSearch_Impl< index_t >::searchOneMismatch().

resize()

void CSRSearch::CResCache::resize ( Uint4  new_sz )

inlineprivate

Definition at line 190 of file sr_search.hpp.

References i, and ncbi::grid::netcache::search::fields::size.

set()

void CSRSearch::CResCache::set ( Uint4  idx, bool  fw_strand  )

inline

Definition at line 221 of file sr_search.hpp.

Referenced by CSRSearch_Impl< index_t >::setResults4Idx().

size()

Uint4 CSRSearch::CResCache::size ( )

inlineprivate

Definition at line 188 of file sr_search.hpp.

Member Data Documentation

f_ind_

vector< Uint1 > CSRSearch::CResCache::f_ind_

private

Definition at line 183 of file sr_search.hpp.

f_res_cache_

vector< TSRResults > CSRSearch::CResCache::f_res_cache_

private

Definition at line 185 of file sr_search.hpp.

r_ind_

vector< Uint1 > CSRSearch::CResCache::r_ind_

private

Definition at line 184 of file sr_search.hpp.

r_res_cache_

vector< TSRResults > CSRSearch::CResCache::r_res_cache_

private

Definition at line 186 of file sr_search.hpp.

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The documentation for this class was generated from the following file:

• include/algo/blast/dbindex_search/sr_search.hpp