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Search Toolkit Book for CSeqEdit_Cmd_ReplaceAnnot_Base

Replace an annotation object of a bioseq or a bioseq-set. More...

#include <objects/seqedit/SeqEdit_Cmd_ReplaceAnnot_.hpp>

+ Inheritance diagram for CSeqEdit_Cmd_ReplaceAnnot_Base:
+ Collaboration diagram for CSeqEdit_Cmd_ReplaceAnnot_Base:

Classes

class  C_Data
 C_Data –. More...
 

Public Types

enum class  E_memberIndex {
  e__allMandatory = 0 , e_id , e_name , e_named ,
  e_data
}
 
typedef CSeqEdit_Id TId
 
typedef string TName
 
typedef bool TNamed
 
typedef C_Data TData
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CSeqEdit_Cmd_ReplaceAnnot_Base (void)
 
virtual ~CSeqEdit_Cmd_ReplaceAnnot_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetId (void) const
 Bioseq or Bioseq_set id Check if a value has been assigned to Id data member. More...
 
bool CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void ResetId (void)
 Reset Id data member. More...
 
const TIdGetId (void) const
 Get the Id member data. More...
 
void SetId (TId &value)
 Assign a value to Id data member. More...
 
TIdSetId (void)
 Assign a value to Id data member. More...
 
bool IsSetName (void) const
 Annotation's name Check if a value has been assigned to Name data member. More...
 
bool CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void ResetName (void)
 Reset Name data member. More...
 
const TNameGetName (void) const
 Get the Name member data. More...
 
void SetName (const TName &value)
 Assign a value to Name data member. More...
 
void SetName (TName &&value)
 
TNameSetName (void)
 Assign a value to Name data member. More...
 
bool IsSetNamed (void) const
 TRUE if an annotation is named Check if a value has been assigned to Named data member. More...
 
bool CanGetNamed (void) const
 Check if it is safe to call GetNamed method. More...
 
void ResetNamed (void)
 Reset Named data member. More...
 
TNamed GetNamed (void) const
 Get the Named member data. More...
 
void SetNamed (TNamed value)
 Assign a value to Named data member. More...
 
TNamedSetNamed (void)
 Assign a value to Named data member. More...
 
bool IsSetData (void) const
 Check if a value has been assigned to Data data member. More...
 
bool CanGetData (void) const
 Check if it is safe to call GetData method. More...
 
void ResetData (void)
 Reset Data data member. More...
 
const TDataGetData (void) const
 Get the Data member data. More...
 
void SetData (TData &value)
 Assign a value to Data data member. More...
 
TDataSetData (void)
 Assign a value to Data data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 CSeqEdit_Cmd_ReplaceAnnot_Base (const CSeqEdit_Cmd_ReplaceAnnot_Base &)
 
CSeqEdit_Cmd_ReplaceAnnot_Baseoperator= (const CSeqEdit_Cmd_ReplaceAnnot_Base &)
 

Private Attributes

Uint4 m_set_State [1]
 
CRef< TIdm_Id
 
string m_Name
 
bool m_Named
 
CRef< TDatam_Data
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Replace an annotation object of a bioseq or a bioseq-set.

CSeqEdit_Cmd_ReplaceAnnot_Base

Definition at line 80 of file SeqEdit_Cmd_ReplaceAnnot_.hpp.


The documentation for this class was generated from the following files:
Modified on Fri Sep 20 14:57:19 2024 by modify_doxy.py rev. 669887