AddReference(void) const | CObject | inline |
AllowAdjacentIntervals(ESubtype subtype) | CSeqFeatData | static |
AllowedFeatureLocation(ESubtype subtype) | CSeqFeatData | static |
AllowStrandBoth(ESubtype subtype) | CSeqFeatData | static |
AllowXref(CSeqFeatData::ESubtype subtype1, CSeqFeatData::ESubtype subtype2) | CSeqFeatData | static |
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive) | CSeqFeatData | virtual |
CanBeDeleted(void) const THROWS_NONE | CObject | inline |
CanHaveGene(ESubtype subtype) | CSeqFeatData | static |
CDebugDumpable(void) | CDebugDumpable | inline |
CheckReferenceOverflow(TCount count) const | CObject | private |
CheckSelected(E_Choice index) const | CSeqFeatData_Base | inline |
CObject(void) | CObject | |
CObject(const CObject &src) | CObject | |
CSeqFeatData(void) | CSeqFeatData | |
CSeqFeatData(const CSeqFeatData &value) | CSeqFeatData | private |
CSeqFeatData_Base(void) | CSeqFeatData_Base | |
CSeqFeatData_Base(const CSeqFeatData_Base &) | CSeqFeatData_Base | private |
CSerialObject(void) | CSerialObject | |
DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CSerialObject | virtual |
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DECLARE_INTERNAL_TYPE_INFO() | CSeqFeatData_Base | |
DeleteThis(void) | CObject | protectedvirtual |
DoDeleteThisObject(void) | CObject | virtual |
DoNotDeleteThisObject(void) | CObject | virtual |
DoSelect(E_Choice index, CObjectMemoryPool *pool=0) | CSeqFeatData_Base | private |
DumpToConsole(void) const | CDebugDumpable | |
e_Biosrc enum value | CSeqFeatData_Base | |
e_Bond enum value | CSeqFeatData_Base | |
e_Cdregion enum value | CSeqFeatData_Base | |
E_Choice enum name | CSeqFeatData_Base | |
E_ChoiceStopper enum name | CSeqFeatData_Base | |
e_Clone enum value | CSeqFeatData_Base | |
e_Comment enum value | CSeqFeatData_Base | |
e_Gene enum value | CSeqFeatData_Base | |
e_Het enum value | CSeqFeatData_Base | |
e_Imp enum value | CSeqFeatData_Base | |
e_MaxChoice enum value | CSeqFeatData_Base | |
e_Non_std_residue enum value | CSeqFeatData_Base | |
e_not_set enum value | CSeqFeatData_Base | |
e_Num enum value | CSeqFeatData_Base | |
e_Org enum value | CSeqFeatData_Base | |
e_Prot enum value | CSeqFeatData_Base | |
e_Psec_str enum value | CSeqFeatData_Base | |
e_Pub enum value | CSeqFeatData_Base | |
e_Region enum value | CSeqFeatData_Base | |
e_Rna enum value | CSeqFeatData_Base | |
e_Rsite enum value | CSeqFeatData_Base | |
e_Seq enum value | CSeqFeatData_Base | |
e_Site enum value | CSeqFeatData_Base | |
e_Txinit enum value | CSeqFeatData_Base | |
e_User enum value | CSeqFeatData_Base | |
e_Variation enum value | CSeqFeatData_Base | |
EAllocFillMode enum name | CObject | |
eAllocFillNone enum value | CObject | |
eAllocFillPattern enum value | CObject | |
eAllocFillZero enum value | CObject | |
EBond enum name | CSeqFeatData_Base | |
EBond(void) | CSeqFeatData_Base | static |
eBond_disulfide enum value | CSeqFeatData_Base | |
eBond_other enum value | CSeqFeatData_Base | |
eBond_thioether enum value | CSeqFeatData_Base | |
eBond_thiolester enum value | CSeqFeatData_Base | |
eBond_xlink enum value | CSeqFeatData_Base | |
eCounterBitsCanBeDeleted | CObject | static |
eCounterBitsInPlainHeap | CObject | static |
eCounterBitsPlaceMask | CObject | static |
eCounterStateMask | CObject | static |
eCounterStep | CObject | static |
eCounterValid | CObject | static |
EFeatureLocationAllowed enum name | CSeqFeatData | |
eFeatureLocationAllowed_Any enum value | CSeqFeatData | |
eFeatureLocationAllowed_Error enum value | CSeqFeatData | |
eFeatureLocationAllowed_NucOnly enum value | CSeqFeatData | |
eFeatureLocationAllowed_ProtOnly enum value | CSeqFeatData | |
EnableDebugDump(bool on) | CDebugDumpable | static |
EPsec_str enum name | CSeqFeatData_Base | |
EPsec_str(void) | CSeqFeatData_Base | static |
ePsec_str_helix enum value | CSeqFeatData_Base | |
ePsec_str_sheet enum value | CSeqFeatData_Base | |
ePsec_str_turn enum value | CSeqFeatData_Base | |
eQual_allele enum value | CSeqFeatData | |
eQual_altitude enum value | CSeqFeatData | |
eQual_anticodon enum value | CSeqFeatData | |
eQual_artificial_location enum value | CSeqFeatData | |
eQual_bad enum value | CSeqFeatData | |
eQual_bio_material enum value | CSeqFeatData | |
eQual_bond_type enum value | CSeqFeatData | |
eQual_bound_moiety enum value | CSeqFeatData | |
eQual_calculated_mol_wt enum value | CSeqFeatData | |
eQual_cell_line enum value | CSeqFeatData | |
eQual_cell_type enum value | CSeqFeatData | |
eQual_chloroplast enum value | CSeqFeatData | |
eQual_chromoplast enum value | CSeqFeatData | |
eQual_chromosome enum value | CSeqFeatData | |
eQual_circular_RNA enum value | CSeqFeatData | |
eQual_citation enum value | CSeqFeatData | |
eQual_clone enum value | CSeqFeatData | |
eQual_clone_lib enum value | CSeqFeatData | |
eQual_coded_by enum value | CSeqFeatData | |
eQual_codon enum value | CSeqFeatData | |
eQual_codon_start enum value | CSeqFeatData | |
eQual_collected_by enum value | CSeqFeatData | |
eQual_collection_date enum value | CSeqFeatData | |
eQual_compare enum value | CSeqFeatData | |
eQual_cons_splice enum value | CSeqFeatData | |
eQual_country enum value | CSeqFeatData | |
eQual_cultivar enum value | CSeqFeatData | |
eQual_culture_collection enum value | CSeqFeatData | |
eQual_cyanelle enum value | CSeqFeatData | |
eQual_db_xref enum value | CSeqFeatData | |
eQual_derived_from enum value | CSeqFeatData | |
eQual_dev_stage enum value | CSeqFeatData | |
eQual_direction enum value | CSeqFeatData | |
eQual_EC_number enum value | CSeqFeatData | |
eQual_ecotype enum value | CSeqFeatData | |
eQual_environmental_sample enum value | CSeqFeatData | |
eQual_estimated_length enum value | CSeqFeatData | |
eQual_evidence enum value | CSeqFeatData | |
eQual_exception enum value | CSeqFeatData | |
eQual_experiment enum value | CSeqFeatData | |
eQual_feat_class enum value | CSeqFeatData | |
eQual_focus enum value | CSeqFeatData | |
eQual_frequency enum value | CSeqFeatData | |
eQual_function enum value | CSeqFeatData | |
eQual_gap_type enum value | CSeqFeatData | |
eQual_gdb_xref enum value | CSeqFeatData | |
eQual_gene enum value | CSeqFeatData | |
eQual_gene_synonym enum value | CSeqFeatData | |
eQual_germline enum value | CSeqFeatData | |
eQual_haplogroup enum value | CSeqFeatData | |
eQual_haplotype enum value | CSeqFeatData | |
eQual_heterogen enum value | CSeqFeatData | |
eQual_host enum value | CSeqFeatData | |
eQual_identified_by enum value | CSeqFeatData | |
eQual_inference enum value | CSeqFeatData | |
eQual_insertion_seq enum value | CSeqFeatData | |
eQual_isolate enum value | CSeqFeatData | |
eQual_isolation_source enum value | CSeqFeatData | |
eQual_kinetoplast enum value | CSeqFeatData | |
eQual_lab_host enum value | CSeqFeatData | |
eQual_label enum value | CSeqFeatData | |
eQual_lat_lon enum value | CSeqFeatData | |
eQual_linkage_evidence enum value | CSeqFeatData | |
eQual_linkage_group enum value | CSeqFeatData | |
eQual_locus_tag enum value | CSeqFeatData | |
eQual_macronuclear enum value | CSeqFeatData | |
eQual_map enum value | CSeqFeatData | |
eQual_mating_type enum value | CSeqFeatData | |
eQual_metagenome_source enum value | CSeqFeatData | |
eQual_metagenomic enum value | CSeqFeatData | |
eQual_mitochondrion enum value | CSeqFeatData | |
eQual_mobile_element enum value | CSeqFeatData | |
eQual_mobile_element_type enum value | CSeqFeatData | |
eQual_mod_base enum value | CSeqFeatData | |
eQual_mol_type enum value | CSeqFeatData | |
eQual_name enum value | CSeqFeatData | |
eQual_ncRNA_class enum value | CSeqFeatData | |
eQual_nomenclature enum value | CSeqFeatData | |
eQual_non_std_residue enum value | CSeqFeatData | |
eQual_note enum value | CSeqFeatData | |
eQual_number enum value | CSeqFeatData | |
eQual_old_locus_tag enum value | CSeqFeatData | |
eQual_operon enum value | CSeqFeatData | |
eQual_organelle enum value | CSeqFeatData | |
eQual_organism enum value | CSeqFeatData | |
eQual_partial enum value | CSeqFeatData | |
eQual_PCR_conditions enum value | CSeqFeatData | |
eQual_PCR_primers enum value | CSeqFeatData | |
eQual_phenotype enum value | CSeqFeatData | |
eQual_plasmid enum value | CSeqFeatData | |
eQual_pop_variant enum value | CSeqFeatData | |
eQual_product enum value | CSeqFeatData | |
eQual_protein_id enum value | CSeqFeatData | |
eQual_proviral enum value | CSeqFeatData | |
eQual_pseudo enum value | CSeqFeatData | |
eQual_pseudogene enum value | CSeqFeatData | |
eQual_rearranged enum value | CSeqFeatData | |
eQual_recombination_class enum value | CSeqFeatData | |
eQual_region_name enum value | CSeqFeatData | |
eQual_regulatory_class enum value | CSeqFeatData | |
eQual_replace enum value | CSeqFeatData | |
eQual_ribosomal_slippage enum value | CSeqFeatData | |
eQual_rpt_family enum value | CSeqFeatData | |
eQual_rpt_type enum value | CSeqFeatData | |
eQual_rpt_unit enum value | CSeqFeatData | |
eQual_rpt_unit_range enum value | CSeqFeatData | |
eQual_rpt_unit_seq enum value | CSeqFeatData | |
eQual_satellite enum value | CSeqFeatData | |
eQual_sec_str_type enum value | CSeqFeatData | |
eQual_segment enum value | CSeqFeatData | |
eQual_sequenced_mol enum value | CSeqFeatData | |
eQual_serotype enum value | CSeqFeatData | |
eQual_serovar enum value | CSeqFeatData | |
eQual_sex enum value | CSeqFeatData | |
eQual_site_type enum value | CSeqFeatData | |
eQual_SO_type enum value | CSeqFeatData | |
eQual_specimen_voucher enum value | CSeqFeatData | |
eQual_standard_name enum value | CSeqFeatData | |
eQual_strain enum value | CSeqFeatData | |
eQual_sub_clone enum value | CSeqFeatData | |
eQual_sub_species enum value | CSeqFeatData | |
eQual_sub_strain enum value | CSeqFeatData | |
eQual_submitter_seqid enum value | CSeqFeatData | |
eQual_tag_peptide enum value | CSeqFeatData | |
eQual_tissue_lib enum value | CSeqFeatData | |
eQual_tissue_type enum value | CSeqFeatData | |
eQual_trans_splicing enum value | CSeqFeatData | |
eQual_transcript_id enum value | CSeqFeatData | |
eQual_transgenic enum value | CSeqFeatData | |
eQual_transl_except enum value | CSeqFeatData | |
eQual_transl_table enum value | CSeqFeatData | |
eQual_translation enum value | CSeqFeatData | |
eQual_transposon enum value | CSeqFeatData | |
eQual_type_material enum value | CSeqFeatData | |
eQual_UniProtKB_evidence enum value | CSeqFeatData | |
eQual_usedin enum value | CSeqFeatData | |
eQual_variety enum value | CSeqFeatData | |
eQual_virion enum value | CSeqFeatData | |
eQual_whole_replicon enum value | CSeqFeatData | |
EQualifier enum name | CSeqFeatData | |
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const | CSerialObject | virtual |
ESite enum name | CSeqFeatData_Base | |
ESite(void) | CSeqFeatData_Base | static |
eSite_acetylation enum value | CSeqFeatData_Base | |
eSite_active enum value | CSeqFeatData_Base | |
eSite_amidation enum value | CSeqFeatData_Base | |
eSite_binding enum value | CSeqFeatData_Base | |
eSite_blocked enum value | CSeqFeatData_Base | |
eSite_cleavage enum value | CSeqFeatData_Base | |
eSite_dna_binding enum value | CSeqFeatData_Base | |
eSite_gamma_carboxyglutamic_acid enum value | CSeqFeatData_Base | |
eSite_glycosylation enum value | CSeqFeatData_Base | |
eSite_hydroxylation enum value | CSeqFeatData_Base | |
eSite_inhibit enum value | CSeqFeatData_Base | |
eSite_lipid_binding enum value | CSeqFeatData_Base | |
eSite_metal_binding enum value | CSeqFeatData_Base | |
eSite_methylation enum value | CSeqFeatData_Base | |
eSite_modified enum value | CSeqFeatData_Base | |
eSite_mutagenized enum value | CSeqFeatData_Base | |
eSite_myristoylation enum value | CSeqFeatData_Base | |
eSite_nitrosylation enum value | CSeqFeatData_Base | |
eSite_np_binding enum value | CSeqFeatData_Base | |
eSite_other enum value | CSeqFeatData_Base | |
eSite_oxidative_deamination enum value | CSeqFeatData_Base | |
eSite_phosphorylation enum value | CSeqFeatData_Base | |
eSite_pyrrolidone_carboxylic_acid enum value | CSeqFeatData_Base | |
eSite_signal_peptide enum value | CSeqFeatData_Base | |
eSite_sulfatation enum value | CSeqFeatData_Base | |
eSite_transit_peptide enum value | CSeqFeatData_Base | |
eSite_transmembrane_region enum value | CSeqFeatData_Base | |
ESubtype enum name | CSeqFeatData | |
eSubtype_10_signal enum value | CSeqFeatData | |
eSubtype_35_signal enum value | CSeqFeatData | |
eSubtype_3clip enum value | CSeqFeatData | |
eSubtype_3UTR enum value | CSeqFeatData | |
eSubtype_5clip enum value | CSeqFeatData | |
eSubtype_5UTR enum value | CSeqFeatData | |
eSubtype_allele enum value | CSeqFeatData | |
eSubtype_any enum value | CSeqFeatData | |
eSubtype_assembly_gap enum value | CSeqFeatData | |
eSubtype_attenuator enum value | CSeqFeatData | |
eSubtype_bad enum value | CSeqFeatData | |
eSubtype_biosrc enum value | CSeqFeatData | |
eSubtype_bond enum value | CSeqFeatData | |
eSubtype_C_region enum value | CSeqFeatData | |
eSubtype_CAAT_signal enum value | CSeqFeatData | |
eSubtype_cdregion enum value | CSeqFeatData | |
eSubtype_centromere enum value | CSeqFeatData | |
eSubtype_clone enum value | CSeqFeatData | |
eSubtype_comment enum value | CSeqFeatData | |
eSubtype_conflict enum value | CSeqFeatData | |
eSubtype_D_loop enum value | CSeqFeatData | |
eSubtype_D_segment enum value | CSeqFeatData | |
eSubtype_EC_number enum value | CSeqFeatData | |
eSubtype_enhancer enum value | CSeqFeatData | |
eSubtype_exon enum value | CSeqFeatData | |
eSubtype_gap enum value | CSeqFeatData | |
eSubtype_GC_signal enum value | CSeqFeatData | |
eSubtype_gene enum value | CSeqFeatData | |
eSubtype_het enum value | CSeqFeatData | |
eSubtype_iDNA enum value | CSeqFeatData | |
eSubtype_imp enum value | CSeqFeatData | |
eSubtype_Imp_CDS enum value | CSeqFeatData | |
eSubtype_intron enum value | CSeqFeatData | |
eSubtype_J_segment enum value | CSeqFeatData | |
eSubtype_LTR enum value | CSeqFeatData | |
eSubtype_mat_peptide enum value | CSeqFeatData | |
eSubtype_mat_peptide_aa enum value | CSeqFeatData | |
eSubtype_max enum value | CSeqFeatData | |
eSubtype_misc_binding enum value | CSeqFeatData | |
eSubtype_misc_difference enum value | CSeqFeatData | |
eSubtype_misc_feature enum value | CSeqFeatData | |
eSubtype_misc_recomb enum value | CSeqFeatData | |
eSubtype_misc_RNA enum value | CSeqFeatData | |
eSubtype_misc_signal enum value | CSeqFeatData | |
eSubtype_misc_structure enum value | CSeqFeatData | |
eSubtype_mobile_element enum value | CSeqFeatData | |
eSubtype_modified_base enum value | CSeqFeatData | |
eSubtype_mRNA enum value | CSeqFeatData | |
eSubtype_mutation enum value | CSeqFeatData | |
eSubtype_N_region enum value | CSeqFeatData | |
eSubtype_ncRNA enum value | CSeqFeatData | |
eSubtype_non_std_residue enum value | CSeqFeatData | |
eSubtype_num enum value | CSeqFeatData | |
eSubtype_old_sequence enum value | CSeqFeatData | |
eSubtype_operon enum value | CSeqFeatData | |
eSubtype_org enum value | CSeqFeatData | |
eSubtype_oriT enum value | CSeqFeatData | |
eSubtype_otherRNA enum value | CSeqFeatData | |
eSubtype_polyA_signal enum value | CSeqFeatData | |
eSubtype_polyA_site enum value | CSeqFeatData | |
eSubtype_precursor_RNA enum value | CSeqFeatData | |
eSubtype_preprotein enum value | CSeqFeatData | |
eSubtype_preRNA enum value | CSeqFeatData | |
eSubtype_prim_transcript enum value | CSeqFeatData | |
eSubtype_primer_bind enum value | CSeqFeatData | |
eSubtype_promoter enum value | CSeqFeatData | |
eSubtype_propeptide enum value | CSeqFeatData | |
eSubtype_propeptide_aa enum value | CSeqFeatData | |
eSubtype_prot enum value | CSeqFeatData | |
eSubtype_protein_bind enum value | CSeqFeatData | |
eSubtype_psec_str enum value | CSeqFeatData | |
eSubtype_pub enum value | CSeqFeatData | |
eSubtype_RBS enum value | CSeqFeatData | |
eSubtype_region enum value | CSeqFeatData | |
eSubtype_regulatory enum value | CSeqFeatData | |
eSubtype_rep_origin enum value | CSeqFeatData | |
eSubtype_repeat_region enum value | CSeqFeatData | |
eSubtype_repeat_unit enum value | CSeqFeatData | |
eSubtype_rRNA enum value | CSeqFeatData | |
eSubtype_rsite enum value | CSeqFeatData | |
eSubtype_S_region enum value | CSeqFeatData | |
eSubtype_satellite enum value | CSeqFeatData | |
eSubtype_scRNA enum value | CSeqFeatData | |
eSubtype_seq enum value | CSeqFeatData | |
eSubtype_sig_peptide enum value | CSeqFeatData | |
eSubtype_sig_peptide_aa enum value | CSeqFeatData | |
eSubtype_site enum value | CSeqFeatData | |
eSubtype_site_ref enum value | CSeqFeatData | |
eSubtype_snoRNA enum value | CSeqFeatData | |
eSubtype_snRNA enum value | CSeqFeatData | |
eSubtype_source enum value | CSeqFeatData | |
eSubtype_stem_loop enum value | CSeqFeatData | |
eSubtype_STS enum value | CSeqFeatData | |
eSubtype_TATA_signal enum value | CSeqFeatData | |
eSubtype_telomere enum value | CSeqFeatData | |
eSubtype_terminator enum value | CSeqFeatData | |
eSubtype_tmRNA enum value | CSeqFeatData | |
eSubtype_transit_peptide enum value | CSeqFeatData | |
eSubtype_transit_peptide_aa enum value | CSeqFeatData | |
eSubtype_tRNA enum value | CSeqFeatData | |
eSubtype_txinit enum value | CSeqFeatData | |
eSubtype_unsure enum value | CSeqFeatData | |
eSubtype_user enum value | CSeqFeatData | |
eSubtype_V_region enum value | CSeqFeatData | |
eSubtype_V_segment enum value | CSeqFeatData | |
eSubtype_variation enum value | CSeqFeatData | |
eSubtype_variation_ref enum value | CSeqFeatData | |
eSubtype_virion enum value | CSeqFeatData | |
EVocabulary enum name | CSeqFeatData | |
eVocabulary_full enum value | CSeqFeatData | |
eVocabulary_genbank enum value | CSeqFeatData | |
FixImportKey(string &key) | CSeqFeatData | static |
FixRegulatoryClassValue(string &val) | CSeqFeatData | static |
GetAllocFillMode(void) | CObject | static |
GetBiosrc(void) const | CSeqFeatData_Base | |
GetBond(void) const | CSeqFeatData_Base | inline |
GetBondList() | CSeqFeatData | static |
GetCdregion(void) const | CSeqFeatData_Base | |
GetClone(void) const | CSeqFeatData_Base | |
GetFeatList() | CSeqFeatData | static |
GetGene(void) const | CSeqFeatData_Base | |
GetHet(void) const | CSeqFeatData_Base | inline |
GetImp(void) const | CSeqFeatData_Base | |
GetKey(EVocabulary vocab=eVocabulary_full) const | CSeqFeatData | |
GetLegalQualifiers(void) const | CSeqFeatData | inline |
GetLegalQualifiers(ESubtype subtype) | CSeqFeatData | static |
GetMandatoryQualifiers(void) const | CSeqFeatData | inline |
GetMandatoryQualifiers(ESubtype subtype) | CSeqFeatData | static |
GetNamespaceName(void) const | CSerialObject | |
GetNamespacePrefix(void) const | CSerialObject | |
GetNon_std_residue(void) const | CSeqFeatData_Base | inline |
GetNum(void) const | CSeqFeatData_Base | |
GetOrg(void) const | CSeqFeatData_Base | |
GetProt(void) const | CSeqFeatData_Base | |
GetPsec_str(void) const | CSeqFeatData_Base | inline |
GetPub(void) const | CSeqFeatData_Base | |
GetQualifierAsString(EQualifier qual) | CSeqFeatData | static |
GetQualifierType(CTempString qual) | CSeqFeatData | static |
GetQualifierTypeAndValue(CTempString qual) | CSeqFeatData | static |
GetRecombinationClassList() | CSeqFeatData | static |
GetRegion(void) const | CSeqFeatData_Base | inline |
GetRegulatoryClass(ESubtype subtype) | CSeqFeatData | static |
GetRegulatoryClass(const string &class_name) | CSeqFeatData | static |
GetRegulatoryClassList() | CSeqFeatData | static |
GetRna(void) const | CSeqFeatData_Base | |
GetRsite(void) const | CSeqFeatData_Base | |
GetSeq(void) const | CSeqFeatData_Base | |
GetSetOfRegulatorySubtypes() | CSeqFeatData | privatestatic |
GetSite(void) const | CSeqFeatData_Base | inline |
GetSiteList() | CSeqFeatData | static |
GetSubtype(void) const | CSeqFeatData | |
GetThisTypeInfo(void) const =0 | CSerialObject | pure virtual |
GetTxinit(void) const | CSeqFeatData_Base | |
GetTypeFromSubtype(ESubtype subtype) | CSeqFeatData | static |
GetUser(void) const | CSeqFeatData_Base | |
GetVariation(void) const | CSeqFeatData_Base | |
HasNamespaceName(void) const | CSerialObject | |
HasNamespacePrefix(void) const | CSerialObject | |
InitCounter(void) | CObject | inlineprivate |
InvalidateCache(void) const | CSeqFeatData | inline |
InvalidateSubtype(void) const | CSeqFeatData | inline |
InvalidObject(void) const | CObject | private |
IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
IsBiosrc(void) const | CSeqFeatData_Base | inline |
IsBond(void) const | CSeqFeatData_Base | inline |
IsCdregion(void) const | CSeqFeatData_Base | inline |
IsClone(void) const | CSeqFeatData_Base | inline |
IsComment(void) const | CSeqFeatData_Base | inline |
IsDiscouragedQual(EQualifier qual) | CSeqFeatData | static |
IsDiscouragedSubtype(ESubtype subtype) | CSeqFeatData | static |
IsGene(void) const | CSeqFeatData_Base | inline |
IsHet(void) const | CSeqFeatData_Base | inline |
IsImp(void) const | CSeqFeatData_Base | inline |
IsLegalProductNameForRibosomalSlippage(const string &product_name) | CSeqFeatData | static |
IsLegalQualifier(EQualifier qual) const | CSeqFeatData | inline |
IsLegalQualifier(ESubtype subtype, EQualifier qual) | CSeqFeatData | static |
IsNon_std_residue(void) const | CSeqFeatData_Base | inline |
IsNum(void) const | CSeqFeatData_Base | inline |
IsOrg(void) const | CSeqFeatData_Base | inline |
IsProt(void) const | CSeqFeatData_Base | inline |
IsPsec_str(void) const | CSeqFeatData_Base | inline |
IsPub(void) const | CSeqFeatData_Base | inline |
IsRegion(void) const | CSeqFeatData_Base | inline |
IsRegulatory(ESubtype subtype) | CSeqFeatData | static |
IsRna(void) const | CSeqFeatData_Base | inline |
IsRsite(void) const | CSeqFeatData_Base | inline |
IsSeq(void) const | CSeqFeatData_Base | inline |
IsSite(void) const | CSeqFeatData_Base | inline |
IsTxinit(void) const | CSeqFeatData_Base | inline |
IsUser(void) const | CSeqFeatData_Base | inline |
IsVariation(void) const | CSeqFeatData_Base | inline |
m_Bond | CSeqFeatData_Base | |
m_choice | CSeqFeatData_Base | private |
m_Counter | CObject | mutableprivate |
m_FeatDataInfo | CSeqFeatData | mutableprivate |
m_Het | CSeqFeatData_Base | |
m_object | CSeqFeatData_Base | |
m_Psec_str | CSeqFeatData_Base | |
m_Site | CSeqFeatData_Base | |
m_string | CSeqFeatData_Base | |
ms_UnassignedByte | CSerialObject | static |
ms_UnassignedStr | CSerialObject | static |
ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
operator delete(void *ptr) | CObject | |
operator delete(void *ptr, void *place) | CObject | |
operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
operator delete[](void *ptr) | CObject | |
operator new(size_t size) | CObject | |
operator new(size_t size, void *place) | CObject | |
operator new(size_t size, CObjectMemoryPool *place) | CObject | |
operator new[](size_t size) | CObject | |
operator=(const CSeqFeatData &value) | CSeqFeatData | private |
CSerialObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
PostRead(void) const | CSeqFeatData | |
ProhibitXref(CSeqFeatData::ESubtype subtype1, CSeqFeatData::ESubtype subtype2) | CSeqFeatData | static |
Referenced(void) const THROWS_NONE | CObject | inline |
ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
ReleaseReference(void) const | CObject | |
RemoveLastReference(TCount count) const | CObject | private |
RemoveReference(void) const | CObject | inline |
RequireLocationIntervalsInBiologicalOrder(ESubtype subtype) | CSeqFeatData | static |
Reset(void) | CSeqFeatData_Base | virtual |
ResetSelection(void) | CSeqFeatData_Base | virtual |
s_GetLegalQualMap() noexcept | CSeqFeatData | privatestatic |
s_InitSubtypesTable(void) | CSeqFeatData | privatestatic |
s_InitXrefAllowedSubtypesTable(void) | CSeqFeatData | static |
s_InitXrefProhibitedSubtypesTable(void) | CSeqFeatData | static |
Select(E_Choice index, EResetVariant reset=eDoResetVariant) | CSeqFeatData_Base | |
Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool) | CSeqFeatData_Base | |
SelectionName(E_Choice index) | CSeqFeatData_Base | static |
SetAllocFillMode(EAllocFillMode mode) | CObject | static |
SetAllocFillMode(const string &value) | CObject | static |
SetBiosrc(TBiosrc &v) | CSeqFeatData | inline |
SetBiosrc(void) | CSeqFeatData | inline |
SetBond(const TBond &v) | CSeqFeatData | inline |
SetBond(void) | CSeqFeatData | inline |
CSeqFeatData_Base::SetBond(TBond value) | CSeqFeatData_Base | inline |
SetCdregion(TCdregion &v) | CSeqFeatData | inline |
SetCdregion(void) | CSeqFeatData | inline |
SetClone(TClone &v) | CSeqFeatData | inline |
SetClone(void) | CSeqFeatData | inline |
SetComment(void) | CSeqFeatData | inline |
SetGene(TGene &v) | CSeqFeatData | inline |
SetGene(void) | CSeqFeatData | inline |
SetHet(THet &v) | CSeqFeatData | inline |
SetHet(void) | CSeqFeatData | inline |
CSeqFeatData_Base::SetHet(const THet &value) | CSeqFeatData_Base | |
SetImp(TImp &v) | CSeqFeatData | inline |
SetImp(void) | CSeqFeatData | inline |
SetNon_std_residue(const TNon_std_residue &v) | CSeqFeatData | inline |
SetNon_std_residue(void) | CSeqFeatData | inline |
SetNum(TNum &v) | CSeqFeatData | inline |
SetNum(void) | CSeqFeatData | inline |
SetOrg(TOrg &v) | CSeqFeatData | inline |
SetOrg(void) | CSeqFeatData | inline |
SetProt(TProt &v) | CSeqFeatData | inline |
SetProt(void) | CSeqFeatData | inline |
SetPsec_str(const TPsec_str &v) | CSeqFeatData | inline |
SetPsec_str(void) | CSeqFeatData | inline |
CSeqFeatData_Base::SetPsec_str(TPsec_str value) | CSeqFeatData_Base | inline |
SetPub(TPub &v) | CSeqFeatData | inline |
SetPub(void) | CSeqFeatData | inline |
SetRegion(const TRegion &v) | CSeqFeatData | inline |
SetRegion(void) | CSeqFeatData | inline |
SetRna(TRna &v) | CSeqFeatData | inline |
SetRna(void) | CSeqFeatData | inline |
SetRsite(TRsite &v) | CSeqFeatData | inline |
SetRsite(void) | CSeqFeatData | inline |
SetSeq(TSeq &v) | CSeqFeatData | inline |
SetSeq(void) | CSeqFeatData | inline |
SetSite(const TSite &v) | CSeqFeatData | inline |
SetSite(void) | CSeqFeatData | inline |
CSeqFeatData_Base::SetSite(TSite value) | CSeqFeatData_Base | inline |
SetTxinit(TTxinit &v) | CSeqFeatData | inline |
SetTxinit(void) | CSeqFeatData | inline |
SetUser(TUser &v) | CSeqFeatData | inline |
SetUser(void) | CSeqFeatData | inline |
SetVariation(TVariation &v) | CSeqFeatData | inline |
SetVariation(void) | CSeqFeatData | inline |
SetVerifyDataGlobal(ESerialVerifyData verify) | CSerialObject | static |
SetVerifyDataThread(ESerialVerifyData verify) | CSerialObject | static |
ShouldRepresentAsGbqual(CSeqFeatData::ESubtype feat_subtype, const CGb_qual &qual) | CSeqFeatData | static |
ShouldRepresentAsGbqual(CSeqFeatData::ESubtype feat_subtype, CSeqFeatData::EQualifier qual_type) | CSeqFeatData | static |
sm_DumpEnabled | CDebugDumpable | privatestatic |
sm_SelectionNames | CSeqFeatData_Base | privatestatic |
SubtypeNameToValue(CTempString sName) | CSeqFeatData | static |
SubtypeValueToName(ESubtype eSubtype) | CSeqFeatData | static |
TBiosrc typedef | CSeqFeatData_Base | |
TBond typedef | CSeqFeatData_Base | |
TCdregion typedef | CSeqFeatData_Base | |
TClone typedef | CSeqFeatData_Base | |
TCount typedef | CObject | |
TCounter typedef | CObject | |
TGene typedef | CSeqFeatData_Base | |
THet typedef | CSeqFeatData_Base | |
ThrowInvalidSelection(E_Choice index) const | CSeqFeatData_Base | |
ThrowNullPointerException(void) | CObject | static |
ThrowNullPointerException(const type_info &type) | CObject | static |
ThrowUnassigned(TMemberIndex index) const | CSerialObject | |
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) const | CSerialObject | |
TImp typedef | CSeqFeatData_Base | |
TLegalQualifiers typedef | CSeqFeatData | |
TLockerType typedef | CObject | |
TNon_std_residue typedef | CSeqFeatData_Base | |
TNum typedef | CSeqFeatData_Base | |
TOrg typedef | CSeqFeatData_Base | |
Tparent typedef | CSeqFeatData | private |
TProt typedef | CSeqFeatData_Base | |
TPsec_str typedef | CSeqFeatData_Base | |
TPub typedef | CSeqFeatData_Base | |
TQualifiers typedef | CSeqFeatData | |
TRegion typedef | CSeqFeatData_Base | |
TRna typedef | CSeqFeatData_Base | |
TRsite typedef | CSeqFeatData_Base | |
TSeq typedef | CSeqFeatData_Base | |
TSite typedef | CSeqFeatData_Base | |
TSubTypeQualifiersMap typedef | CSeqFeatData | |
TSubtypes typedef | CSeqFeatData | |
TSubtypeSet typedef | CSeqFeatData | private |
TTxinit typedef | CSeqFeatData_Base | |
TUser typedef | CSeqFeatData_Base | |
TVariation typedef | CSeqFeatData_Base | |
UnassignedByte(void) | CSerialObject | inlinestatic |
UnassignedString(void) | CSerialObject | inlinestatic |
UnassignedStringUTF8(void) | CSerialObject | inlinestatic |
Which(void) const | CSeqFeatData_Base | inline |
x_GetVerifyData(void) | CSerialObject | privatestatic |
x_InitFeatDataInfo(void) const | CSeqFeatData | private |
~CDebugDumpable(void) | CDebugDumpable | virtual |
~CObject(void) | CObject | virtual |
~CSeqFeatData(void) | CSeqFeatData | |
~CSeqFeatData_Base(void) | CSeqFeatData_Base | virtual |
~CSerialObject(void) | CSerialObject | virtual |