NCBI C++ ToolKit
CSeqMasker Member List

This is the complete list of members for CSeqMasker, including all inherited members.

abs_merge_cutoff_distCSeqMaskerprivate
AlgoVersionCSeqMaskerstatic
CSeqMasker(const string &lstat_name, Uint1 arg_window_size, Uint4 arg_window_step, Uint1 arg_unit_step, Uint4 arg_textend, Uint4 arg_cutoff_score, Uint4 arg_max_score, Uint4 arg_min_score, Uint4 arg_set_max_score, Uint4 arg_set_min_score, bool arg_merge_pass, Uint4 arg_merge_cutoff_score, Uint4 arg_abs_merge_cutoff_dist, Uint4 arg_mean_merge_cutoff_dist, Uint1 arg_merge_unit_step, const string &arg_trigger, Uint1 tmin_count, bool arg_discontig, Uint4 arg_pattern, bool arg_use_ba, double min_pct=-1.0, double extend_pct=-1.0, double thres_pct=-1.0, double max_pct=-1.0)CSeqMasker
CSeqMasker::mitemCSeqMaskerfriend
discontigCSeqMaskerprivate
DoMask(const objects::CSeqVector &data, TSeqPos start, TSeqPos end) constCSeqMaskerprivate
eTrigger_Mean enum valueCSeqMaskerprivate
eTrigger_Min enum valueCSeqMaskerprivate
mean_merge_cutoff_distCSeqMaskerprivate
Merge(TMList &m, TMList::iterator mi, TMList &um, TMList::iterator &umi) constCSeqMaskerprivate
merge_cutoff_scoreCSeqMaskerprivate
merge_passCSeqMaskerprivate
merge_unit_stepCSeqMaskerprivate
MergeAvg(TMList::iterator mi, const TMList::iterator &umi, Uint4 unit_size) constCSeqMaskerprivate
MergeMaskInfo(TMaskList *dest, const TMaskList *src)CSeqMaskerstatic
operator()(const objects::CSeqVector &data) constCSeqMasker
patternCSeqMaskerprivate
scoreCSeqMaskerprivate
score_p3CSeqMaskerprivate
TMaskedInterval typedefCSeqMasker
TMaskList typedefCSeqMasker
TMList typedefCSeqMaskerprivate
triggerCSeqMaskerprivate
trigger_scoreCSeqMaskerprivate
unit_stepCSeqMaskerprivate
ustatCSeqMaskerprivate
window_sizeCSeqMaskerprivate
window_stepCSeqMaskerprivate
~CSeqMasker()CSeqMasker
Modified on Fri Sep 20 14:57:06 2024 by modify_doxy.py rev. 669887