NCBI C++ ToolKit
|
This is the complete list of members for CSeqMasker, including all inherited members.
abs_merge_cutoff_dist | CSeqMasker | private |
AlgoVersion | CSeqMasker | static |
CSeqMasker(const string &lstat_name, Uint1 arg_window_size, Uint4 arg_window_step, Uint1 arg_unit_step, Uint4 arg_textend, Uint4 arg_cutoff_score, Uint4 arg_max_score, Uint4 arg_min_score, Uint4 arg_set_max_score, Uint4 arg_set_min_score, bool arg_merge_pass, Uint4 arg_merge_cutoff_score, Uint4 arg_abs_merge_cutoff_dist, Uint4 arg_mean_merge_cutoff_dist, Uint1 arg_merge_unit_step, const string &arg_trigger, Uint1 tmin_count, bool arg_discontig, Uint4 arg_pattern, bool arg_use_ba, double min_pct=-1.0, double extend_pct=-1.0, double thres_pct=-1.0, double max_pct=-1.0) | CSeqMasker | |
CSeqMasker::mitem | CSeqMasker | friend |
discontig | CSeqMasker | private |
DoMask(const objects::CSeqVector &data, TSeqPos start, TSeqPos end) const | CSeqMasker | private |
eTrigger_Mean enum value | CSeqMasker | private |
eTrigger_Min enum value | CSeqMasker | private |
mean_merge_cutoff_dist | CSeqMasker | private |
Merge(TMList &m, TMList::iterator mi, TMList &um, TMList::iterator &umi) const | CSeqMasker | private |
merge_cutoff_score | CSeqMasker | private |
merge_pass | CSeqMasker | private |
merge_unit_step | CSeqMasker | private |
MergeAvg(TMList::iterator mi, const TMList::iterator &umi, Uint4 unit_size) const | CSeqMasker | private |
MergeMaskInfo(TMaskList *dest, const TMaskList *src) | CSeqMasker | static |
operator()(const objects::CSeqVector &data) const | CSeqMasker | |
pattern | CSeqMasker | private |
score | CSeqMasker | private |
score_p3 | CSeqMasker | private |
TMaskedInterval typedef | CSeqMasker | |
TMaskList typedef | CSeqMasker | |
TMList typedef | CSeqMasker | private |
trigger | CSeqMasker | private |
trigger_score | CSeqMasker | private |
unit_step | CSeqMasker | private |
ustat | CSeqMasker | private |
window_size | CSeqMasker | private |
window_step | CSeqMasker | private |
~CSeqMasker() | CSeqMasker |