AddReference(void) const | CObject | inline |
alloc | CSeqMaskerOstat | protected |
CanBeDeleted(void) const THROWS_NONE | CObject | inline |
CDebugDumpable(void) | CDebugDumpable | inline |
CheckReferenceOverflow(TCount count) const | CObject | private |
CObject(void) | CObject | |
CObject(const CObject &src) | CObject | |
count_map | CSeqMaskerOstat | protected |
counts | CSeqMaskerOstatOpt | private |
createCacheBitArray(Uint4 **cba) | CSeqMaskerOstatOpt | private |
CSeqMaskerOstat(CNcbiOstream &os, bool alloc, string const &metadata) | CSeqMaskerOstat | explicit |
CSeqMaskerOstat(const CSeqMaskerOstat &) | CSeqMaskerOstat | private |
CSeqMaskerOstatOpt(CNcbiOstream &os, Uint2 sz, bool alloc, string const &metadata) | CSeqMaskerOstatOpt | explicit |
CSeqMaskerOstatOptAscii(const string &name, Uint2 sz, string const &metadata) | CSeqMaskerOstatOptAscii | explicit |
CSeqMaskerOstatOptAscii(CNcbiOstream &os, Uint2 sz, string const &metadata) | CSeqMaskerOstatOptAscii | explicit |
DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CObject | virtual |
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
DeleteThis(void) | CObject | protectedvirtual |
DoDeleteThisObject(void) | CObject | virtual |
doFinalize() | CSeqMaskerOstatOpt | protectedvirtual |
DoNotDeleteThisObject(void) | CObject | virtual |
doSetComment(const string &) | CSeqMaskerOstat | inlineprotectedvirtual |
doSetParam(const string &, Uint4) | CSeqMaskerOstat | protectedvirtual |
doSetUnitCount(Uint4 unit, Uint4 count) | CSeqMaskerOstatOpt | protectedvirtual |
doSetUnitSize(Uint4 us) | CSeqMaskerOstatOpt | protectedvirtual |
DumpToConsole(void) const | CDebugDumpable | |
EAllocFillMode enum name | CObject | |
eAllocFillNone enum value | CObject | |
eAllocFillPattern enum value | CObject | |
eAllocFillZero enum value | CObject | |
eCounterBitsCanBeDeleted | CObject | static |
eCounterBitsInPlainHeap | CObject | static |
eCounterBitsPlaceMask | CObject | static |
eCounterStateMask | CObject | static |
eCounterStep | CObject | static |
eCounterValid | CObject | static |
EnableDebugDump(bool on) | CDebugDumpable | static |
final enum value | CSeqMaskerOstat | private |
finalize() | CSeqMaskerOstat | |
findBestRoff(Uint1 k, Uint1 &max_coll, Uint4 &M, Uint4 *ht) | CSeqMaskerOstatOpt | private |
fmt_gen_algo_ver | CSeqMaskerOstat | protected |
FormatMetaData() const | CSeqMaskerOstat | protected |
FormatParameters() const | CSeqMaskerOstat | protected |
FormatVersion | CSeqMaskerOstatOptAscii | static |
GetAllocFillMode(void) | CObject | static |
GetParams() const | CSeqMaskerOstatOpt | protected |
GetStatFmtVersion() const | CSeqMaskerOstatOptAscii | inlinevirtual |
InitCounter(void) | CObject | inlineprivate |
InvalidObject(void) const | CObject | private |
IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
m_Counter | CObject | mutableprivate |
max_count | CSeqMaskerOstat | protected |
metadata | CSeqMaskerOstat | protected |
ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
operator delete(void *ptr) | CObject | |
operator delete(void *ptr, void *place) | CObject | |
operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
operator delete[](void *ptr) | CObject | |
operator new(size_t size) | CObject | |
operator new(size_t size, void *place) | CObject | |
operator new(size_t size, CObjectMemoryPool *place) | CObject | |
operator new[](size_t size) | CObject | |
operator=(const CSeqMaskerOstat &) | CSeqMaskerOstat | private |
CObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
out_stream | CSeqMaskerOstat | protected |
PARAMS | CSeqMaskerOstat | protectedstatic |
pvalues | CSeqMaskerOstat | protected |
Referenced(void) const THROWS_NONE | CObject | inline |
ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
ReleaseReference(void) const | CObject | |
RemoveLastReference(TCount count) const | CObject | private |
RemoveReference(void) const | CObject | inline |
SetAllocFillMode(EAllocFillMode mode) | CObject | static |
SetAllocFillMode(const string &value) | CObject | static |
setComment(const string &msg) | CSeqMaskerOstat | inline |
SetCount(Uint4 count, double pct) | CSeqMaskerOstat | inline |
SetMaxCount(Uint4 mc) | CSeqMaskerOstat | inline |
setParam(const string &name, Uint4 value) | CSeqMaskerOstat | |
SetStatAlgoVersion(CSeqMaskerVersion const &v) | CSeqMaskerOstat | inline |
setUnitCount(Uint4 unit, Uint4 count) | CSeqMaskerOstat | |
setUnitSize(Uint1 us) | CSeqMaskerOstat | |
size_requested | CSeqMaskerOstatOpt | private |
sm_DumpEnabled | CDebugDumpable | privatestatic |
start enum value | CSeqMaskerOstat | private |
STAT_ALGO_COMPONENT_NAME | CSeqMaskerOstat | static |
StatAlgoVersion | CSeqMaskerOstat | static |
state | CSeqMaskerOstat | private |
TCount typedef | CObject | |
TCounter typedef | CObject | |
thres enum value | CSeqMaskerOstat | private |
ThrowNullPointerException(void) | CObject | static |
ThrowNullPointerException(const type_info &type) | CObject | static |
TLockerType typedef | CObject | |
udata enum value | CSeqMaskerOstat | private |
ulen enum value | CSeqMaskerOstat | private |
unit_bit_size | CSeqMaskerOstatOpt | private |
unit_size | CSeqMaskerOstat | protected |
units | CSeqMaskerOstatOpt | private |
UnitSize() const | CSeqMaskerOstatOpt | protected |
write_out(const params &p) const | CSeqMaskerOstatOptAscii | protectedvirtual |
WriteBinMetaData(std::ostream &os) const | CSeqMaskerOstat | protected |
~CDebugDumpable(void) | CDebugDumpable | virtual |
~CObject(void) | CObject | virtual |
~CSeqMaskerOstat() | CSeqMaskerOstat | inlinevirtual |
~CSeqMaskerOstatOpt() | CSeqMaskerOstatOpt | inlinevirtual |
~CSeqMaskerOstatOptAscii() | CSeqMaskerOstatOptAscii | inlinevirtual |